Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18125 and RS_RS18130 are separated by 489 nucleotides RS_RS18130 and RS_RS18135 are separated by 46 nucleotides RS_RS18135 and RS_RS18140 are separated by 119 nucleotides
RS_RS18125: RS_RS18125 - acyl-CoA thioesterase, at 252,190 to 252,684
_RS18125
RS_RS18130: RS_RS18130 - hypothetical protein, at 253,174 to 253,440
_RS18130
RS_RS18135: RS_RS18135 - hypothetical protein, at 253,487 to 254,530
_RS18135
RS_RS18140: RS_RS18140 - IS5/IS1182 family transposase, at 254,650 to 255,636
_RS18140
Position (kb) 253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 252.540 kb on - strand, within RS_RS18125 at 252.540 kb on - strand, within RS_RS18125 at 252.569 kb on + strand, within RS_RS18125 at 252.569 kb on + strand, within RS_RS18125 at 252.569 kb on + strand, within RS_RS18125 at 252.570 kb on - strand, within RS_RS18125 at 252.570 kb on - strand, within RS_RS18125 at 252.570 kb on - strand, within RS_RS18125 at 252.704 kb on + strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.101 kb on - strand at 253.447 kb on + strand at 253.448 kb on - strand at 253.448 kb on - strand at 253.448 kb on - strand at 253.567 kb on - strand at 253.567 kb on - strand at 254.070 kb on + strand, within RS_RS18135 at 254.127 kb on + strand, within RS_RS18135 at 254.201 kb on + strand, within RS_RS18135 at 254.202 kb on - strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.239 kb on + strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.240 kb on - strand, within RS_RS18135 at 254.392 kb on + strand, within RS_RS18135 at 254.497 kb on + strand at 254.498 kb on - strand at 254.499 kb on + strand at 254.499 kb on + strand at 254.499 kb on + strand at 254.499 kb on + strand at 254.500 kb on - strand at 254.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 252,540 - RS_RS18125 0.71 +0.1 252,540 - RS_RS18125 0.71 +0.1 252,569 + RS_RS18125 0.77 +0.3 252,569 + RS_RS18125 0.77 -1.2 252,569 + RS_RS18125 0.77 -2.0 252,570 - RS_RS18125 0.77 +0.5 252,570 - RS_RS18125 0.77 -1.4 252,570 - RS_RS18125 0.77 +0.0 252,704 + +1.5 253,064 - -1.1 253,064 - +0.6 253,101 - +0.4 253,447 + +0.0 253,448 - -2.5 253,448 - +0.6 253,448 - -0.1 253,567 - +0.2 253,567 - -0.2 254,070 + RS_RS18135 0.56 +0.1 254,127 + RS_RS18135 0.61 +0.3 254,201 + RS_RS18135 0.68 -0.8 254,202 - RS_RS18135 0.68 +1.2 254,239 + RS_RS18135 0.72 -0.2 254,239 + RS_RS18135 0.72 +0.7 254,239 + RS_RS18135 0.72 -2.8 254,239 + RS_RS18135 0.72 +0.7 254,239 + RS_RS18135 0.72 +0.5 254,239 + RS_RS18135 0.72 +0.7 254,239 + RS_RS18135 0.72 -3.2 254,239 + RS_RS18135 0.72 +0.7 254,240 - RS_RS18135 0.72 -0.5 254,240 - RS_RS18135 0.72 -1.6 254,240 - RS_RS18135 0.72 +0.9 254,240 - RS_RS18135 0.72 +0.6 254,240 - RS_RS18135 0.72 -0.6 254,240 - RS_RS18135 0.72 +0.0 254,240 - RS_RS18135 0.72 +1.4 254,240 - RS_RS18135 0.72 +1.2 254,240 - RS_RS18135 0.72 -0.2 254,392 + RS_RS18135 0.87 +0.5 254,497 + -0.2 254,498 - +0.0 254,499 + +0.7 254,499 + -0.8 254,499 + +0.1 254,499 + +0.6 254,500 - +0.1 254,500 - -1.5
Or see this region's nucleotide sequence