Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17485 and RS_RS17490 overlap by 4 nucleotides RS_RS17490 and RS_RS17495 are separated by 52 nucleotides RS_RS17495 and RS_RS17500 are separated by 21 nucleotides
RS_RS17485: RS_RS17485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 69,010 to 70,188
_RS17485
RS_RS17490: RS_RS17490 - electron transfer flavoprotein subunit beta/FixA family protein, at 70,185 to 70,970
_RS17490
RS_RS17495: RS_RS17495 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 71,023 to 72,267
_RS17495
RS_RS17500: RS_RS17500 - hybrid-cluster NAD(P)-dependent oxidoreductase, at 72,289 to 73,437
_RS17500
Position (kb) 71
72
73 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 70.263 kb on + strand at 70.506 kb on + strand at 70.646 kb on + strand, within RS_RS17490 at 70.646 kb on + strand, within RS_RS17490 at 70.646 kb on + strand, within RS_RS17490 at 70.647 kb on - strand, within RS_RS17490 at 70.702 kb on - strand, within RS_RS17490 at 70.708 kb on - strand, within RS_RS17490 at 70.708 kb on - strand, within RS_RS17490 at 70.895 kb on - strand at 70.895 kb on - strand at 70.895 kb on - strand at 70.938 kb on + strand at 71.030 kb on + strand at 71.074 kb on + strand at 71.075 kb on - strand at 71.075 kb on - strand at 71.075 kb on - strand at 71.095 kb on + strand at 71.095 kb on + strand at 71.096 kb on - strand at 71.096 kb on - strand at 71.096 kb on - strand at 71.194 kb on + strand, within RS_RS17495 at 71.194 kb on + strand, within RS_RS17495 at 71.247 kb on + strand, within RS_RS17495 at 71.356 kb on + strand, within RS_RS17495 at 71.357 kb on - strand, within RS_RS17495 at 71.357 kb on - strand, within RS_RS17495 at 71.524 kb on + strand, within RS_RS17495 at 71.627 kb on - strand, within RS_RS17495 at 71.668 kb on + strand, within RS_RS17495 at 71.668 kb on + strand, within RS_RS17495 at 71.669 kb on - strand, within RS_RS17495 at 71.674 kb on + strand, within RS_RS17495 at 71.674 kb on + strand, within RS_RS17495 at 71.674 kb on + strand, within RS_RS17495 at 71.805 kb on + strand, within RS_RS17495 at 72.070 kb on + strand, within RS_RS17495 at 72.136 kb on + strand, within RS_RS17495 at 72.137 kb on - strand, within RS_RS17495 at 72.181 kb on + strand at 72.191 kb on - strand at 72.191 kb on - strand at 72.226 kb on + strand at 72.227 kb on - strand at 72.265 kb on + strand at 72.432 kb on - strand, within RS_RS17500 at 72.538 kb on + strand, within RS_RS17500 at 72.538 kb on + strand, within RS_RS17500 at 72.539 kb on - strand, within RS_RS17500 at 72.570 kb on + strand, within RS_RS17500 at 72.570 kb on + strand, within RS_RS17500 at 72.571 kb on - strand, within RS_RS17500 at 72.709 kb on + strand, within RS_RS17500 at 72.709 kb on + strand, within RS_RS17500 at 72.709 kb on + strand, within RS_RS17500 at 72.709 kb on + strand, within RS_RS17500 at 72.710 kb on - strand, within RS_RS17500 at 72.710 kb on - strand, within RS_RS17500 at 72.710 kb on - strand, within RS_RS17500 at 72.882 kb on + strand, within RS_RS17500 at 72.882 kb on + strand, within RS_RS17500 at 73.000 kb on - strand, within RS_RS17500 at 73.018 kb on + strand, within RS_RS17500 at 73.018 kb on + strand, within RS_RS17500 at 73.019 kb on - strand, within RS_RS17500
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 70,263 + +1.2 70,506 + +3.8 70,646 + RS_RS17490 0.59 +0.9 70,646 + RS_RS17490 0.59 +0.0 70,646 + RS_RS17490 0.59 +0.4 70,647 - RS_RS17490 0.59 +1.5 70,702 - RS_RS17490 0.66 +1.1 70,708 - RS_RS17490 0.67 +0.1 70,708 - RS_RS17490 0.67 +1.4 70,895 - -0.4 70,895 - +1.5 70,895 - -1.0 70,938 + +0.3 71,030 + -0.3 71,074 + -0.3 71,075 - +1.7 71,075 - +0.3 71,075 - +0.1 71,095 + +0.9 71,095 + -0.9 71,096 - -0.6 71,096 - +1.4 71,096 - +0.4 71,194 + RS_RS17495 0.14 -4.4 71,194 + RS_RS17495 0.14 +0.7 71,247 + RS_RS17495 0.18 +0.5 71,356 + RS_RS17495 0.27 -0.4 71,357 - RS_RS17495 0.27 +1.1 71,357 - RS_RS17495 0.27 -0.3 71,524 + RS_RS17495 0.40 -1.1 71,627 - RS_RS17495 0.49 +0.0 71,668 + RS_RS17495 0.52 -1.6 71,668 + RS_RS17495 0.52 +0.0 71,669 - RS_RS17495 0.52 +0.2 71,674 + RS_RS17495 0.52 -2.2 71,674 + RS_RS17495 0.52 +0.1 71,674 + RS_RS17495 0.52 +1.2 71,805 + RS_RS17495 0.63 +1.4 72,070 + RS_RS17495 0.84 -0.4 72,136 + RS_RS17495 0.89 +1.6 72,137 - RS_RS17495 0.89 +0.8 72,181 + +1.2 72,191 - -0.5 72,191 - -1.1 72,226 + -0.9 72,227 - -0.1 72,265 + -1.3 72,432 - RS_RS17500 0.12 -2.3 72,538 + RS_RS17500 0.22 -0.2 72,538 + RS_RS17500 0.22 -0.1 72,539 - RS_RS17500 0.22 +0.4 72,570 + RS_RS17500 0.24 +0.8 72,570 + RS_RS17500 0.24 -3.0 72,571 - RS_RS17500 0.25 +1.0 72,709 + RS_RS17500 0.37 -1.3 72,709 + RS_RS17500 0.37 +0.3 72,709 + RS_RS17500 0.37 +0.4 72,709 + RS_RS17500 0.37 +0.5 72,710 - RS_RS17500 0.37 +0.2 72,710 - RS_RS17500 0.37 -0.0 72,710 - RS_RS17500 0.37 -3.8 72,882 + RS_RS17500 0.52 -0.3 72,882 + RS_RS17500 0.52 -1.9 73,000 - RS_RS17500 0.62 +0.6 73,018 + RS_RS17500 0.63 -0.4 73,018 + RS_RS17500 0.63 +1.2 73,019 - RS_RS17500 0.64 +1.4
Or see this region's nucleotide sequence