Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS07865 and RS_RS07870 are separated by 237 nucleotides RS_RS07870 and RS_RS07875 are separated by 115 nucleotides RS_RS07875 and RS_RS07880 are separated by 97 nucleotides RS_RS07880 and RS_RS07885 are separated by 74 nucleotides
RS_RS07865: RS_RS07865 - O-acetylhomoserine aminocarboxypropyltransferase, at 1,677,026 to 1,678,360
_RS07865
RS_RS07870: RS_RS07870 - CBS domain-containing protein, at 1,678,598 to 1,679,053
_RS07870
RS_RS07875: RS_RS07875 - MFS transporter, at 1,679,169 to 1,681,076
_RS07875
RS_RS07880: RS_RS07880 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,681,174 to 1,681,599
_RS07880
RS_RS07885: RS_RS07885 - chorismate synthase, at 1,681,674 to 1,682,774
_RS07885
Position (kb) 1679
1680
1681
1682 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1678.197 kb on + strand, within RS_RS07865 at 1678.399 kb on + strand at 1678.400 kb on - strand at 1678.535 kb on + strand at 1678.641 kb on - strand at 1678.952 kb on + strand, within RS_RS07870 at 1679.012 kb on + strand at 1679.012 kb on + strand at 1679.013 kb on - strand at 1679.293 kb on - strand at 1679.517 kb on - strand, within RS_RS07875 at 1679.517 kb on - strand, within RS_RS07875 at 1679.517 kb on - strand, within RS_RS07875 at 1679.517 kb on - strand, within RS_RS07875 at 1679.517 kb on - strand, within RS_RS07875 at 1679.562 kb on + strand, within RS_RS07875 at 1679.563 kb on - strand, within RS_RS07875 at 1680.117 kb on + strand, within RS_RS07875 at 1680.117 kb on + strand, within RS_RS07875 at 1680.261 kb on + strand, within RS_RS07875 at 1680.262 kb on - strand, within RS_RS07875 at 1680.445 kb on - strand, within RS_RS07875 at 1680.445 kb on - strand, within RS_RS07875 at 1680.450 kb on + strand, within RS_RS07875 at 1680.450 kb on + strand, within RS_RS07875 at 1680.450 kb on + strand, within RS_RS07875 at 1680.450 kb on + strand, within RS_RS07875 at 1680.450 kb on + strand, within RS_RS07875 at 1680.451 kb on - strand, within RS_RS07875 at 1680.451 kb on - strand, within RS_RS07875 at 1680.504 kb on - strand, within RS_RS07875 at 1680.748 kb on - strand, within RS_RS07875 at 1681.094 kb on - strand at 1681.168 kb on - strand at 1681.168 kb on - strand at 1681.225 kb on + strand, within RS_RS07880 at 1681.226 kb on - strand, within RS_RS07880 at 1681.396 kb on + strand, within RS_RS07880 at 1681.396 kb on + strand, within RS_RS07880 at 1681.516 kb on + strand, within RS_RS07880 at 1681.611 kb on + strand at 1681.611 kb on + strand at 1681.612 kb on - strand at 1682.004 kb on + strand, within RS_RS07885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 1,678,197 + RS_RS07865 0.88 +0.0 1,678,399 + +1.2 1,678,400 - -4.2 1,678,535 + -1.7 1,678,641 - -0.9 1,678,952 + RS_RS07870 0.78 -0.8 1,679,012 + -1.2 1,679,012 + -1.9 1,679,013 - -0.1 1,679,293 - -1.6 1,679,517 - RS_RS07875 0.18 -0.4 1,679,517 - RS_RS07875 0.18 +0.6 1,679,517 - RS_RS07875 0.18 -0.4 1,679,517 - RS_RS07875 0.18 -0.5 1,679,517 - RS_RS07875 0.18 -1.2 1,679,562 + RS_RS07875 0.21 -1.5 1,679,563 - RS_RS07875 0.21 -0.7 1,680,117 + RS_RS07875 0.50 +0.1 1,680,117 + RS_RS07875 0.50 -1.3 1,680,261 + RS_RS07875 0.57 -3.5 1,680,262 - RS_RS07875 0.57 +0.9 1,680,445 - RS_RS07875 0.67 +0.9 1,680,445 - RS_RS07875 0.67 +0.0 1,680,450 + RS_RS07875 0.67 -0.8 1,680,450 + RS_RS07875 0.67 -1.0 1,680,450 + RS_RS07875 0.67 +0.8 1,680,450 + RS_RS07875 0.67 +0.2 1,680,450 + RS_RS07875 0.67 -0.9 1,680,451 - RS_RS07875 0.67 -0.5 1,680,451 - RS_RS07875 0.67 -1.0 1,680,504 - RS_RS07875 0.70 -0.9 1,680,748 - RS_RS07875 0.83 +0.5 1,681,094 - -0.1 1,681,168 - +1.7 1,681,168 - +0.3 1,681,225 + RS_RS07880 0.12 +0.1 1,681,226 - RS_RS07880 0.12 +0.3 1,681,396 + RS_RS07880 0.52 +0.6 1,681,396 + RS_RS07880 0.52 +0.2 1,681,516 + RS_RS07880 0.80 -0.6 1,681,611 + +0.5 1,681,611 + +0.6 1,681,612 - +0.2 1,682,004 + RS_RS07885 0.30 -3.4
Or see this region's nucleotide sequence