Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03105

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03100 and RS_RS03105 are separated by 402 nucleotidesRS_RS03105 and RS_RS03110 are separated by 21 nucleotidesRS_RS03110 and RS_RS03115 are separated by 64 nucleotides RS_RS03100: RS_RS03100 - recombination-associated protein RdgC, at 664,810 to 665,733 _RS03100 RS_RS03105: RS_RS03105 - cytochrome b/b6 domain-containing protein, at 666,136 to 666,774 _RS03105 RS_RS03110: RS_RS03110 - hypothetical protein, at 666,796 to 667,569 _RS03110 RS_RS03115: RS_RS03115 - pentapeptide MXKDX repeat protein, at 667,634 to 667,897 _RS03115 Position (kb) 666 667Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 665.425 kb on + strand, within RS_RS03100at 665.886 kb on + strandat 665.887 kb on - strandat 665.887 kb on - strandat 665.932 kb on - strandat 666.003 kb on - strandat 666.003 kb on - strandat 666.094 kb on + strandat 666.094 kb on + strandat 666.276 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.403 kb on + strand, within RS_RS03105at 666.554 kb on - strand, within RS_RS03105at 666.731 kb on + strandat 666.782 kb on + strandat 667.042 kb on + strand, within RS_RS03110at 667.084 kb on + strand, within RS_RS03110at 667.084 kb on + strand, within RS_RS03110at 667.085 kb on - strand, within RS_RS03110at 667.085 kb on - strand, within RS_RS03110at 667.087 kb on + strand, within RS_RS03110at 667.186 kb on + strand, within RS_RS03110at 667.186 kb on + strand, within RS_RS03110at 667.186 kb on + strand, within RS_RS03110at 667.187 kb on - strand, within RS_RS03110at 667.187 kb on - strand, within RS_RS03110at 667.303 kb on - strand, within RS_RS03110at 667.315 kb on + strand, within RS_RS03110at 667.316 kb on - strand, within RS_RS03110at 667.342 kb on + strand, within RS_RS03110at 667.345 kb on + strand, within RS_RS03110at 667.346 kb on - strand, within RS_RS03110at 667.402 kb on + strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.403 kb on - strand, within RS_RS03110at 667.429 kb on + strand, within RS_RS03110at 667.429 kb on + strand, within RS_RS03110at 667.458 kb on + strand, within RS_RS03110at 667.458 kb on + strand, within RS_RS03110at 667.459 kb on - strand, within RS_RS03110at 667.459 kb on - strand, within RS_RS03110at 667.529 kb on - strandat 667.546 kb on + strandat 667.546 kb on + strandat 667.547 kb on - strandat 667.581 kb on + strandat 667.582 kb on - strandat 667.614 kb on - strandat 667.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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665,425 + RS_RS03100 0.67 +0.5
665,886 + +1.6
665,887 - -3.5
665,887 - +1.4
665,932 - -0.1
666,003 - +0.7
666,003 - +0.5
666,094 + +1.0
666,094 + +1.0
666,276 + RS_RS03105 0.22 -0.3
666,280 + RS_RS03105 0.23 -0.6
666,280 + RS_RS03105 0.23 -2.9
666,280 + RS_RS03105 0.23 -0.2
666,281 - RS_RS03105 0.23 +0.8
666,281 - RS_RS03105 0.23 -0.1
666,281 - RS_RS03105 0.23 -2.7
666,281 - RS_RS03105 0.23 -1.5
666,281 - RS_RS03105 0.23 -0.0
666,403 + RS_RS03105 0.42 -1.5
666,554 - RS_RS03105 0.65 -0.0
666,731 + -2.5
666,782 + -3.3
667,042 + RS_RS03110 0.32 -1.4
667,084 + RS_RS03110 0.37 -1.7
667,084 + RS_RS03110 0.37 -0.6
667,085 - RS_RS03110 0.37 -1.5
667,085 - RS_RS03110 0.37 -0.1
667,087 + RS_RS03110 0.38 +1.1
667,186 + RS_RS03110 0.50 +0.0
667,186 + RS_RS03110 0.50 +1.9
667,186 + RS_RS03110 0.50 +0.1
667,187 - RS_RS03110 0.51 +1.1
667,187 - RS_RS03110 0.51 +0.7
667,303 - RS_RS03110 0.66 -1.7
667,315 + RS_RS03110 0.67 -1.0
667,316 - RS_RS03110 0.67 -0.5
667,342 + RS_RS03110 0.71 -1.5
667,345 + RS_RS03110 0.71 +0.4
667,346 - RS_RS03110 0.71 +1.6
667,402 + RS_RS03110 0.78 +0.1
667,403 - RS_RS03110 0.78 -3.4
667,403 - RS_RS03110 0.78 +0.9
667,403 - RS_RS03110 0.78 -0.3
667,403 - RS_RS03110 0.78 -1.3
667,403 - RS_RS03110 0.78 +0.3
667,429 + RS_RS03110 0.82 +0.3
667,429 + RS_RS03110 0.82 +0.1
667,458 + RS_RS03110 0.86 +0.3
667,458 + RS_RS03110 0.86 -0.4
667,459 - RS_RS03110 0.86 -0.9
667,459 - RS_RS03110 0.86 +0.0
667,529 - -0.2
667,546 + +0.2
667,546 + +0.3
667,547 - -0.4
667,581 + +0.3
667,582 - +1.5
667,614 - +1.0
667,614 - +0.4

Or see this region's nucleotide sequence