Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01570

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01560 and RS_RS01565 are separated by 229 nucleotidesRS_RS01565 and RS_RS01570 are separated by 44 nucleotidesRS_RS01570 and RS_RS01575 are separated by 237 nucleotidesRS_RS01575 and RS_RS01580 are separated by 151 nucleotides RS_RS01560: RS_RS01560 - teicoplanin resistance protein VanZ, at 347,988 to 349,214 _RS01560 RS_RS01565: RS_RS01565 - hypothetical protein, at 349,444 to 349,674 _RS01565 RS_RS01570: RS_RS01570 - phospholipase C, phosphocholine-specific, at 349,719 to 351,821 _RS01570 RS_RS01575: RS_RS01575 - hypothetical protein, at 352,059 to 352,373 _RS01575 RS_RS01580: RS_RS01580 - type III secretion system YopJ family effector RipAE, at 352,525 to 354,456 _RS01580 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 349.152 kb on + strandat 349.228 kb on - strandat 349.337 kb on + strandat 349.338 kb on - strandat 349.338 kb on - strandat 349.416 kb on - strandat 349.662 kb on + strandat 349.662 kb on + strandat 349.663 kb on - strandat 349.663 kb on - strandat 349.663 kb on - strandat 349.833 kb on + strandat 349.908 kb on + strandat 349.908 kb on + strandat 350.161 kb on - strand, within RS_RS01570at 350.190 kb on + strand, within RS_RS01570at 350.226 kb on + strand, within RS_RS01570at 350.227 kb on - strand, within RS_RS01570at 350.268 kb on + strand, within RS_RS01570at 350.268 kb on + strand, within RS_RS01570at 350.268 kb on + strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.341 kb on - strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.398 kb on - strand, within RS_RS01570at 350.458 kb on - strand, within RS_RS01570at 350.470 kb on - strand, within RS_RS01570at 350.490 kb on + strand, within RS_RS01570at 350.503 kb on - strand, within RS_RS01570at 350.577 kb on + strand, within RS_RS01570at 350.682 kb on + strand, within RS_RS01570at 350.682 kb on + strand, within RS_RS01570at 350.694 kb on + strand, within RS_RS01570at 350.766 kb on + strand, within RS_RS01570at 350.847 kb on - strand, within RS_RS01570at 350.880 kb on + strand, within RS_RS01570at 350.896 kb on - strand, within RS_RS01570at 351.142 kb on - strand, within RS_RS01570at 351.174 kb on + strand, within RS_RS01570at 351.345 kb on + strand, within RS_RS01570at 351.550 kb on - strand, within RS_RS01570at 351.630 kb on + strandat 351.630 kb on + strandat 351.631 kb on - strandat 351.794 kb on + strandat 351.794 kb on + strandat 351.839 kb on + strandat 351.839 kb on + strandat 351.971 kb on + strandat 351.999 kb on + strandat 352.094 kb on + strand, within RS_RS01575at 352.218 kb on + strand, within RS_RS01575at 352.248 kb on + strand, within RS_RS01575at 352.249 kb on - strand, within RS_RS01575at 352.249 kb on - strand, within RS_RS01575at 352.249 kb on - strand, within RS_RS01575at 352.311 kb on - strand, within RS_RS01575at 352.314 kb on + strand, within RS_RS01575at 352.315 kb on - strand, within RS_RS01575at 352.315 kb on - strand, within RS_RS01575at 352.320 kb on + strand, within RS_RS01575at 352.320 kb on + strand, within RS_RS01575at 352.320 kb on + strand, within RS_RS01575at 352.320 kb on + strand, within RS_RS01575at 352.583 kb on + strandat 352.583 kb on + strandat 352.584 kb on - strandat 352.584 kb on - strandat 352.584 kb on - strandat 352.584 kb on - strandat 352.584 kb on - strandat 352.625 kb on + strandat 352.626 kb on - strandat 352.626 kb on - strandat 352.682 kb on + strandat 352.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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349,152 + -0.4
349,228 - -0.4
349,337 + -1.2
349,338 - +0.4
349,338 - +0.5
349,416 - -0.1
349,662 + -0.2
349,662 + +0.6
349,663 - -0.2
349,663 - -1.2
349,663 - +1.2
349,833 + +0.1
349,908 + -3.3
349,908 + -1.2
350,161 - RS_RS01570 0.21 +0.5
350,190 + RS_RS01570 0.22 +2.4
350,226 + RS_RS01570 0.24 +0.1
350,227 - RS_RS01570 0.24 +0.5
350,268 + RS_RS01570 0.26 +0.1
350,268 + RS_RS01570 0.26 -0.9
350,268 + RS_RS01570 0.26 -2.0
350,269 - RS_RS01570 0.26 -0.5
350,269 - RS_RS01570 0.26 -1.7
350,269 - RS_RS01570 0.26 +0.2
350,269 - RS_RS01570 0.26 +0.1
350,269 - RS_RS01570 0.26 +1.4
350,341 - RS_RS01570 0.30 -0.9
350,397 + RS_RS01570 0.32 -0.7
350,397 + RS_RS01570 0.32 -0.3
350,397 + RS_RS01570 0.32 -1.0
350,397 + RS_RS01570 0.32 -0.8
350,398 - RS_RS01570 0.32 -0.0
350,458 - RS_RS01570 0.35 +0.3
350,470 - RS_RS01570 0.36 -2.8
350,490 + RS_RS01570 0.37 +0.4
350,503 - RS_RS01570 0.37 -0.5
350,577 + RS_RS01570 0.41 -0.1
350,682 + RS_RS01570 0.46 +1.0
350,682 + RS_RS01570 0.46 +0.9
350,694 + RS_RS01570 0.46 -0.8
350,766 + RS_RS01570 0.50 +2.2
350,847 - RS_RS01570 0.54 -0.6
350,880 + RS_RS01570 0.55 -1.0
350,896 - RS_RS01570 0.56 -1.2
351,142 - RS_RS01570 0.68 +0.4
351,174 + RS_RS01570 0.69 -1.6
351,345 + RS_RS01570 0.77 +0.6
351,550 - RS_RS01570 0.87 +0.6
351,630 + +0.8
351,630 + +0.0
351,631 - +0.4
351,794 + -0.1
351,794 + +0.3
351,839 + +0.6
351,839 + -0.3
351,971 + -1.3
351,999 + +0.4
352,094 + RS_RS01575 0.11 -0.2
352,218 + RS_RS01575 0.50 +0.9
352,248 + RS_RS01575 0.60 -1.4
352,249 - RS_RS01575 0.60 +1.0
352,249 - RS_RS01575 0.60 +0.7
352,249 - RS_RS01575 0.60 +0.1
352,311 - RS_RS01575 0.80 +1.4
352,314 + RS_RS01575 0.81 -1.1
352,315 - RS_RS01575 0.81 +0.0
352,315 - RS_RS01575 0.81 -0.1
352,320 + RS_RS01575 0.83 -1.7
352,320 + RS_RS01575 0.83 -0.6
352,320 + RS_RS01575 0.83 -0.9
352,320 + RS_RS01575 0.83 +1.1
352,583 + +1.0
352,583 + -1.4
352,584 - +0.2
352,584 - +0.5
352,584 - -2.0
352,584 - +0.4
352,584 - +2.1
352,625 + +0.7
352,626 - -1.2
352,626 - -0.3
352,682 + +0.3
352,683 - -0.4

Or see this region's nucleotide sequence