Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00645 and RS_RS00650 are separated by 20 nucleotides RS_RS00650 and RS_RS00655 are separated by 309 nucleotides RS_RS00655 and RS_RS00660 are separated by 72 nucleotides
RS_RS00645: RS_RS00645 - phosphatase PAP2 family protein, at 152,819 to 154,792
_RS00645
RS_RS00650: RS_RS00650 - AraC family transcriptional regulator, at 154,813 to 155,694
_RS00650
RS_RS00655: RS_RS00655 - GYD domain-containing protein, at 156,004 to 156,297
_RS00655
RS_RS00660: RS_RS00660 - S-adenosylmethionine synthase, at 156,370 to 157,560
_RS00660
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 153.861 kb on - strand, within RS_RS00645 at 153.896 kb on + strand, within RS_RS00645 at 153.896 kb on + strand, within RS_RS00645 at 154.244 kb on + strand, within RS_RS00645 at 154.244 kb on + strand, within RS_RS00645 at 154.470 kb on - strand, within RS_RS00645 at 154.470 kb on - strand, within RS_RS00645 at 154.470 kb on - strand, within RS_RS00645 at 154.754 kb on + strand at 154.755 kb on - strand at 154.831 kb on + strand at 154.831 kb on + strand at 154.831 kb on + strand at 154.831 kb on + strand at 154.832 kb on - strand at 154.832 kb on - strand at 154.940 kb on + strand, within RS_RS00650 at 154.940 kb on + strand, within RS_RS00650 at 154.940 kb on + strand, within RS_RS00650 at 154.940 kb on + strand, within RS_RS00650 at 154.941 kb on - strand, within RS_RS00650 at 154.947 kb on - strand, within RS_RS00650 at 154.947 kb on - strand, within RS_RS00650 at 155.000 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.329 kb on + strand, within RS_RS00650 at 155.329 kb on + strand, within RS_RS00650 at 155.329 kb on + strand, within RS_RS00650 at 155.330 kb on - strand, within RS_RS00650 at 155.330 kb on - strand, within RS_RS00650 at 155.330 kb on - strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.673 kb on - strand at 155.970 kb on + strand at 156.148 kb on + strand, within RS_RS00655 at 156.148 kb on + strand, within RS_RS00655 at 156.148 kb on + strand, within RS_RS00655 at 156.319 kb on + strand at 156.319 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 153,861 - RS_RS00645 0.53 -0.5 153,896 + RS_RS00645 0.55 +0.6 153,896 + RS_RS00645 0.55 +0.3 154,244 + RS_RS00645 0.72 +0.1 154,244 + RS_RS00645 0.72 -1.7 154,470 - RS_RS00645 0.84 -0.1 154,470 - RS_RS00645 0.84 +0.6 154,470 - RS_RS00645 0.84 -3.7 154,754 + +0.7 154,755 - -1.9 154,831 + +0.0 154,831 + -1.5 154,831 + +1.5 154,831 + +1.0 154,832 - +0.6 154,832 - +0.6 154,940 + RS_RS00650 0.14 +0.4 154,940 + RS_RS00650 0.14 -0.1 154,940 + RS_RS00650 0.14 +0.8 154,940 + RS_RS00650 0.14 -1.1 154,941 - RS_RS00650 0.15 -2.2 154,947 - RS_RS00650 0.15 +0.2 154,947 - RS_RS00650 0.15 -0.0 155,000 + RS_RS00650 0.21 +1.1 155,132 + RS_RS00650 0.36 +1.0 155,132 + RS_RS00650 0.36 +1.2 155,132 + RS_RS00650 0.36 -1.2 155,132 + RS_RS00650 0.36 +0.1 155,132 + RS_RS00650 0.36 -0.5 155,133 - RS_RS00650 0.36 +1.2 155,133 - RS_RS00650 0.36 -0.8 155,133 - RS_RS00650 0.36 +0.3 155,133 - RS_RS00650 0.36 +0.9 155,329 + RS_RS00650 0.59 +0.0 155,329 + RS_RS00650 0.59 +0.7 155,329 + RS_RS00650 0.59 -0.9 155,330 - RS_RS00650 0.59 +0.2 155,330 - RS_RS00650 0.59 -0.5 155,330 - RS_RS00650 0.59 -2.4 155,522 + RS_RS00650 0.80 -0.3 155,522 + RS_RS00650 0.80 -1.1 155,522 + RS_RS00650 0.80 +0.5 155,522 + RS_RS00650 0.80 -3.0 155,522 + RS_RS00650 0.80 +0.0 155,522 + RS_RS00650 0.80 +0.4 155,523 - RS_RS00650 0.80 -0.6 155,523 - RS_RS00650 0.80 +0.2 155,523 - RS_RS00650 0.80 -1.1 155,523 - RS_RS00650 0.80 -0.9 155,523 - RS_RS00650 0.80 +0.9 155,673 - -1.6 155,970 + +0.0 156,148 + RS_RS00655 0.49 -1.9 156,148 + RS_RS00655 0.49 -0.6 156,148 + RS_RS00655 0.49 -1.2 156,319 + +0.4 156,319 + -1.1
Or see this region's nucleotide sequence