Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00640 and RS_RS00645 are separated by 253 nucleotides RS_RS00645 and RS_RS00650 are separated by 20 nucleotides
RS_RS00640: RS_RS00640 - HPP family protein, at 151,429 to 152,565
_RS00640
RS_RS00645: RS_RS00645 - phosphatase PAP2 family protein, at 152,819 to 154,792
_RS00645
RS_RS00650: RS_RS00650 - AraC family transcriptional regulator, at 154,813 to 155,694
_RS00650
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 151.883 kb on + strand, within RS_RS00640 at 152.067 kb on - strand, within RS_RS00640 at 152.067 kb on - strand, within RS_RS00640 at 152.433 kb on - strand, within RS_RS00640 at 152.561 kb on + strand at 152.562 kb on - strand at 152.617 kb on + strand at 152.618 kb on - strand at 152.771 kb on - strand at 152.771 kb on - strand at 153.053 kb on + strand, within RS_RS00645 at 153.266 kb on + strand, within RS_RS00645 at 153.266 kb on + strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.267 kb on - strand, within RS_RS00645 at 153.317 kb on + strand, within RS_RS00645 at 153.344 kb on + strand, within RS_RS00645 at 153.344 kb on + strand, within RS_RS00645 at 153.345 kb on - strand, within RS_RS00645 at 153.412 kb on + strand, within RS_RS00645 at 153.412 kb on + strand, within RS_RS00645 at 153.413 kb on - strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645 at 153.449 kb on + strand, within RS_RS00645 at 153.572 kb on + strand, within RS_RS00645 at 153.572 kb on + strand, within RS_RS00645 at 153.573 kb on - strand, within RS_RS00645 at 153.720 kb on - strand, within RS_RS00645 at 153.720 kb on - strand, within RS_RS00645 at 153.861 kb on - strand, within RS_RS00645 at 153.896 kb on + strand, within RS_RS00645 at 153.896 kb on + strand, within RS_RS00645 at 154.244 kb on + strand, within RS_RS00645 at 154.244 kb on + strand, within RS_RS00645 at 154.470 kb on - strand, within RS_RS00645 at 154.470 kb on - strand, within RS_RS00645 at 154.470 kb on - strand, within RS_RS00645 at 154.754 kb on + strand at 154.755 kb on - strand at 154.831 kb on + strand at 154.831 kb on + strand at 154.831 kb on + strand at 154.831 kb on + strand at 154.832 kb on - strand at 154.832 kb on - strand at 154.940 kb on + strand, within RS_RS00650 at 154.940 kb on + strand, within RS_RS00650 at 154.940 kb on + strand, within RS_RS00650 at 154.940 kb on + strand, within RS_RS00650 at 154.941 kb on - strand, within RS_RS00650 at 154.947 kb on - strand, within RS_RS00650 at 154.947 kb on - strand, within RS_RS00650 at 155.000 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.132 kb on + strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.133 kb on - strand, within RS_RS00650 at 155.329 kb on + strand, within RS_RS00650 at 155.329 kb on + strand, within RS_RS00650 at 155.329 kb on + strand, within RS_RS00650 at 155.330 kb on - strand, within RS_RS00650 at 155.330 kb on - strand, within RS_RS00650 at 155.330 kb on - strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.522 kb on + strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.523 kb on - strand, within RS_RS00650 at 155.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 151,883 + RS_RS00640 0.40 +1.3 152,067 - RS_RS00640 0.56 +0.3 152,067 - RS_RS00640 0.56 -0.4 152,433 - RS_RS00640 0.88 -0.0 152,561 + -0.5 152,562 - -0.2 152,617 + +0.4 152,618 - +0.7 152,771 - +0.3 152,771 - -1.9 153,053 + RS_RS00645 0.12 +0.3 153,266 + RS_RS00645 0.23 +1.0 153,266 + RS_RS00645 0.23 -0.3 153,267 - RS_RS00645 0.23 -0.3 153,267 - RS_RS00645 0.23 -0.0 153,267 - RS_RS00645 0.23 -1.0 153,267 - RS_RS00645 0.23 -0.7 153,317 + RS_RS00645 0.25 +0.8 153,344 + RS_RS00645 0.27 +1.3 153,344 + RS_RS00645 0.27 -0.5 153,345 - RS_RS00645 0.27 +0.6 153,412 + RS_RS00645 0.30 -1.3 153,412 + RS_RS00645 0.30 -0.3 153,413 - RS_RS00645 0.30 -1.2 153,449 + RS_RS00645 0.32 +1.4 153,449 + RS_RS00645 0.32 -0.1 153,449 + RS_RS00645 0.32 +2.4 153,449 + RS_RS00645 0.32 +1.0 153,572 + RS_RS00645 0.38 -2.8 153,572 + RS_RS00645 0.38 +0.6 153,573 - RS_RS00645 0.38 -0.5 153,720 - RS_RS00645 0.46 -1.1 153,720 - RS_RS00645 0.46 +2.6 153,861 - RS_RS00645 0.53 -0.5 153,896 + RS_RS00645 0.55 +0.6 153,896 + RS_RS00645 0.55 +0.3 154,244 + RS_RS00645 0.72 +0.1 154,244 + RS_RS00645 0.72 -1.7 154,470 - RS_RS00645 0.84 -0.1 154,470 - RS_RS00645 0.84 +0.6 154,470 - RS_RS00645 0.84 -3.7 154,754 + +0.7 154,755 - -1.9 154,831 + +0.0 154,831 + -1.5 154,831 + +1.5 154,831 + +1.0 154,832 - +0.6 154,832 - +0.6 154,940 + RS_RS00650 0.14 +0.4 154,940 + RS_RS00650 0.14 -0.1 154,940 + RS_RS00650 0.14 +0.8 154,940 + RS_RS00650 0.14 -1.1 154,941 - RS_RS00650 0.15 -2.2 154,947 - RS_RS00650 0.15 +0.2 154,947 - RS_RS00650 0.15 -0.0 155,000 + RS_RS00650 0.21 +1.1 155,132 + RS_RS00650 0.36 +1.0 155,132 + RS_RS00650 0.36 +1.2 155,132 + RS_RS00650 0.36 -1.2 155,132 + RS_RS00650 0.36 +0.1 155,132 + RS_RS00650 0.36 -0.5 155,133 - RS_RS00650 0.36 +1.2 155,133 - RS_RS00650 0.36 -0.8 155,133 - RS_RS00650 0.36 +0.3 155,133 - RS_RS00650 0.36 +0.9 155,329 + RS_RS00650 0.59 +0.0 155,329 + RS_RS00650 0.59 +0.7 155,329 + RS_RS00650 0.59 -0.9 155,330 - RS_RS00650 0.59 +0.2 155,330 - RS_RS00650 0.59 -0.5 155,330 - RS_RS00650 0.59 -2.4 155,522 + RS_RS00650 0.80 -0.3 155,522 + RS_RS00650 0.80 -1.1 155,522 + RS_RS00650 0.80 +0.5 155,522 + RS_RS00650 0.80 -3.0 155,522 + RS_RS00650 0.80 +0.0 155,522 + RS_RS00650 0.80 +0.4 155,523 - RS_RS00650 0.80 -0.6 155,523 - RS_RS00650 0.80 +0.2 155,523 - RS_RS00650 0.80 -1.1 155,523 - RS_RS00650 0.80 -0.9 155,523 - RS_RS00650 0.80 +0.9 155,673 - -1.6
Or see this region's nucleotide sequence