Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_30

Experiment: bismuth(III) chloride 0.000025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_28 and Pf6N2E2_29 are separated by 223 nucleotidesPf6N2E2_29 and Pf6N2E2_30 are separated by 37 nucleotidesPf6N2E2_30 and Pf6N2E2_31 are separated by 97 nucleotides Pf6N2E2_28 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 65,741 to 66,181 _28 Pf6N2E2_29 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 66,405 to 66,905 _29 Pf6N2E2_30 - Antisigma transmembrane sensor FpvR, at 66,943 to 67,926 _30 Pf6N2E2_31 - Iron(III) dicitrate transport protein FecA @ Iron siderophore receptor protein, at 68,024 to 70,462 _31 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1at 66.062 kb on + strand, within Pf6N2E2_28at 66.063 kb on - strand, within Pf6N2E2_28at 66.063 kb on - strand, within Pf6N2E2_28at 66.208 kb on + strandat 66.209 kb on - strandat 66.248 kb on + strandat 66.248 kb on + strandat 66.248 kb on + strandat 66.248 kb on + strandat 66.249 kb on - strandat 66.249 kb on - strandat 66.296 kb on + strandat 66.296 kb on + strandat 66.296 kb on + strandat 66.297 kb on - strandat 66.297 kb on - strandat 66.297 kb on - strandat 66.302 kb on + strandat 66.302 kb on + strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.342 kb on + strandat 66.343 kb on - strandat 66.343 kb on - strandat 66.343 kb on - strandat 66.355 kb on + strandat 66.447 kb on + strandat 66.448 kb on - strandat 66.448 kb on - strandat 66.574 kb on - strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.662 kb on + strand, within Pf6N2E2_29at 66.663 kb on - strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.849 kb on + strand, within Pf6N2E2_29at 66.850 kb on - strand, within Pf6N2E2_29at 66.850 kb on - strand, within Pf6N2E2_29at 66.851 kb on + strand, within Pf6N2E2_29at 66.851 kb on + strand, within Pf6N2E2_29at 66.852 kb on - strand, within Pf6N2E2_29at 66.852 kb on - strand, within Pf6N2E2_29at 67.113 kb on + strand, within Pf6N2E2_30at 67.113 kb on + strand, within Pf6N2E2_30at 67.207 kb on + strand, within Pf6N2E2_30at 67.282 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.295 kb on - strand, within Pf6N2E2_30at 67.377 kb on + strand, within Pf6N2E2_30at 67.377 kb on + strand, within Pf6N2E2_30at 67.378 kb on - strand, within Pf6N2E2_30at 67.687 kb on - strand, within Pf6N2E2_30at 67.866 kb on + strandat 67.866 kb on + strandat 67.866 kb on + strandat 67.866 kb on + strandat 67.867 kb on - strandat 67.913 kb on + strandat 67.914 kb on - strandat 67.914 kb on - strandat 67.994 kb on - strandat 68.053 kb on + strandat 68.061 kb on + strandat 68.061 kb on + strandat 68.061 kb on + strandat 68.062 kb on - strandat 68.062 kb on - strandat 68.062 kb on - strandat 68.117 kb on + strandat 68.132 kb on - strandat 68.676 kb on - strand, within Pf6N2E2_31

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Per-strain Table

Position Strand Gene LocusTag Fraction bismuth(III) chloride 0.000025 M
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66,062 + Pf6N2E2_28 0.73 -0.5
66,063 - Pf6N2E2_28 0.73 +0.4
66,063 - Pf6N2E2_28 0.73 -0.4
66,208 + -0.6
66,209 - +1.2
66,248 + +0.5
66,248 + +0.3
66,248 + +0.5
66,248 + -0.1
66,249 - -1.1
66,249 - -0.8
66,296 + +0.1
66,296 + -0.1
66,296 + -0.6
66,297 - -0.1
66,297 - +0.1
66,297 - -0.0
66,302 + +0.9
66,302 + +0.6
66,303 - -0.1
66,303 - -0.2
66,303 - -0.2
66,303 - +0.1
66,303 - +0.2
66,303 - -0.4
66,303 - -1.1
66,342 + -0.4
66,343 - -1.2
66,343 - +0.6
66,343 - -0.2
66,355 + -0.1
66,447 + +0.5
66,448 - +0.8
66,448 - -0.2
66,574 - Pf6N2E2_29 0.34 -1.5
66,577 + Pf6N2E2_29 0.34 +0.9
66,577 + Pf6N2E2_29 0.34 -0.6
66,577 + Pf6N2E2_29 0.34 +0.8
66,577 + Pf6N2E2_29 0.34 +0.5
66,577 + Pf6N2E2_29 0.34 -0.6
66,577 + Pf6N2E2_29 0.34 -0.2
66,662 + Pf6N2E2_29 0.51 -0.8
66,663 - Pf6N2E2_29 0.51 +0.5
66,693 + Pf6N2E2_29 0.57 -0.2
66,693 + Pf6N2E2_29 0.57 +0.2
66,693 + Pf6N2E2_29 0.57 -0.3
66,693 + Pf6N2E2_29 0.57 -1.6
66,694 - Pf6N2E2_29 0.58 -0.8
66,694 - Pf6N2E2_29 0.58 +0.4
66,694 - Pf6N2E2_29 0.58 +0.8
66,694 - Pf6N2E2_29 0.58 -0.2
66,694 - Pf6N2E2_29 0.58 +0.6
66,849 + Pf6N2E2_29 0.89 +0.7
66,850 - Pf6N2E2_29 0.89 +0.5
66,850 - Pf6N2E2_29 0.89 -1.0
66,851 + Pf6N2E2_29 0.89 -0.3
66,851 + Pf6N2E2_29 0.89 +0.4
66,852 - Pf6N2E2_29 0.89 +1.7
66,852 - Pf6N2E2_29 0.89 -0.1
67,113 + Pf6N2E2_30 0.17 -1.0
67,113 + Pf6N2E2_30 0.17 +0.0
67,207 + Pf6N2E2_30 0.27 +0.0
67,282 + Pf6N2E2_30 0.34 +1.3
67,294 + Pf6N2E2_30 0.36 -0.5
67,294 + Pf6N2E2_30 0.36 -0.6
67,294 + Pf6N2E2_30 0.36 -0.6
67,295 - Pf6N2E2_30 0.36 -0.3
67,377 + Pf6N2E2_30 0.44 -1.6
67,377 + Pf6N2E2_30 0.44 -1.4
67,378 - Pf6N2E2_30 0.44 -0.5
67,687 - Pf6N2E2_30 0.76 -0.8
67,866 + -0.1
67,866 + -0.4
67,866 + +1.2
67,866 + -1.2
67,867 - -0.1
67,913 + +1.0
67,914 - -0.2
67,914 - -0.7
67,994 - +1.1
68,053 + -0.2
68,061 + +0.1
68,061 + -0.3
68,061 + -0.2
68,062 - +0.2
68,062 - +0.3
68,062 - -0.0
68,117 + +1.4
68,132 - +0.4
68,676 - Pf6N2E2_31 0.27 -0.3

Or see this region's nucleotide sequence