Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1582

Experiment: bismuth(III) chloride 0.000025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1581 and Pf6N2E2_1582 are separated by 2 nucleotidesPf6N2E2_1582 and Pf6N2E2_1583 overlap by 23 nucleotides Pf6N2E2_1581 - Type I secretion outer membrane protein, TolC precursor, at 1,850,003 to 1,851,376 _1581 Pf6N2E2_1582 - HlyD family secretion protein, at 1,851,379 to 1,852,695 _1582 Pf6N2E2_1583 - ABC-type protease/lipase transport system, ATPase and permease components, at 1,852,673 to 1,854,457 _1583 Position (kb) 1851 1852 1853Strain fitness (log2 ratio) -3 -2 -1 0 1at 1850.415 kb on + strand, within Pf6N2E2_1581at 1850.415 kb on + strand, within Pf6N2E2_1581at 1850.435 kb on + strand, within Pf6N2E2_1581at 1850.435 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.449 kb on - strand, within Pf6N2E2_1581at 1850.449 kb on - strand, within Pf6N2E2_1581at 1850.449 kb on - strand, within Pf6N2E2_1581at 1850.481 kb on + strand, within Pf6N2E2_1581at 1850.835 kb on + strand, within Pf6N2E2_1581at 1850.835 kb on + strand, within Pf6N2E2_1581at 1850.928 kb on + strand, within Pf6N2E2_1581at 1850.928 kb on + strand, within Pf6N2E2_1581at 1850.928 kb on + strand, within Pf6N2E2_1581at 1851.015 kb on + strand, within Pf6N2E2_1581at 1851.015 kb on + strand, within Pf6N2E2_1581at 1851.015 kb on + strand, within Pf6N2E2_1581at 1851.016 kb on - strand, within Pf6N2E2_1581at 1851.046 kb on - strand, within Pf6N2E2_1581at 1851.066 kb on + strand, within Pf6N2E2_1581at 1851.067 kb on - strand, within Pf6N2E2_1581at 1851.204 kb on + strand, within Pf6N2E2_1581at 1851.205 kb on - strand, within Pf6N2E2_1581at 1851.344 kb on + strandat 1851.344 kb on + strandat 1851.344 kb on + strandat 1851.345 kb on - strandat 1851.345 kb on - strandat 1851.345 kb on - strandat 1851.432 kb on - strandat 1851.548 kb on + strand, within Pf6N2E2_1582at 1851.549 kb on - strand, within Pf6N2E2_1582at 1851.835 kb on - strand, within Pf6N2E2_1582at 1851.881 kb on + strand, within Pf6N2E2_1582at 1851.881 kb on + strand, within Pf6N2E2_1582at 1852.118 kb on + strand, within Pf6N2E2_1582at 1853.013 kb on + strand, within Pf6N2E2_1583at 1853.013 kb on + strand, within Pf6N2E2_1583at 1853.092 kb on - strand, within Pf6N2E2_1583at 1853.547 kb on + strand, within Pf6N2E2_1583at 1853.547 kb on + strand, within Pf6N2E2_1583at 1853.566 kb on + strand, within Pf6N2E2_1583at 1853.676 kb on + strand, within Pf6N2E2_1583

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Per-strain Table

Position Strand Gene LocusTag Fraction bismuth(III) chloride 0.000025 M
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1,850,415 + Pf6N2E2_1581 0.30 -1.1
1,850,415 + Pf6N2E2_1581 0.30 -2.8
1,850,435 + Pf6N2E2_1581 0.31 -0.2
1,850,435 + Pf6N2E2_1581 0.31 +1.0
1,850,448 + Pf6N2E2_1581 0.32 +0.4
1,850,448 + Pf6N2E2_1581 0.32 +0.0
1,850,448 + Pf6N2E2_1581 0.32 -0.3
1,850,448 + Pf6N2E2_1581 0.32 +0.3
1,850,448 + Pf6N2E2_1581 0.32 +0.8
1,850,448 + Pf6N2E2_1581 0.32 +0.9
1,850,449 - Pf6N2E2_1581 0.32 -0.0
1,850,449 - Pf6N2E2_1581 0.32 +0.4
1,850,449 - Pf6N2E2_1581 0.32 -0.3
1,850,481 + Pf6N2E2_1581 0.35 -1.1
1,850,835 + Pf6N2E2_1581 0.61 -1.5
1,850,835 + Pf6N2E2_1581 0.61 +0.7
1,850,928 + Pf6N2E2_1581 0.67 -0.4
1,850,928 + Pf6N2E2_1581 0.67 +0.6
1,850,928 + Pf6N2E2_1581 0.67 +0.1
1,851,015 + Pf6N2E2_1581 0.74 -0.4
1,851,015 + Pf6N2E2_1581 0.74 +0.4
1,851,015 + Pf6N2E2_1581 0.74 -0.3
1,851,016 - Pf6N2E2_1581 0.74 -0.9
1,851,046 - Pf6N2E2_1581 0.76 -0.8
1,851,066 + Pf6N2E2_1581 0.77 +0.1
1,851,067 - Pf6N2E2_1581 0.77 +0.4
1,851,204 + Pf6N2E2_1581 0.87 +0.5
1,851,205 - Pf6N2E2_1581 0.87 +0.3
1,851,344 + +0.1
1,851,344 + -1.4
1,851,344 + -0.7
1,851,345 - +0.4
1,851,345 - -1.7
1,851,345 - +1.3
1,851,432 - +1.5
1,851,548 + Pf6N2E2_1582 0.13 -1.1
1,851,549 - Pf6N2E2_1582 0.13 -0.1
1,851,835 - Pf6N2E2_1582 0.35 -0.8
1,851,881 + Pf6N2E2_1582 0.38 +1.5
1,851,881 + Pf6N2E2_1582 0.38 -0.8
1,852,118 + Pf6N2E2_1582 0.56 -0.9
1,853,013 + Pf6N2E2_1583 0.19 -0.0
1,853,013 + Pf6N2E2_1583 0.19 -0.1
1,853,092 - Pf6N2E2_1583 0.23 +0.3
1,853,547 + Pf6N2E2_1583 0.49 +0.7
1,853,547 + Pf6N2E2_1583 0.49 +0.3
1,853,566 + Pf6N2E2_1583 0.50 -1.3
1,853,676 + Pf6N2E2_1583 0.56 +0.1

Or see this region's nucleotide sequence