Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06091

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06090 and H281DRAFT_06091 are separated by 89 nucleotidesH281DRAFT_06091 and H281DRAFT_06092 are separated by 328 nucleotides H281DRAFT_06090: H281DRAFT_06090 - N-ethylmaleimide reductase, at 107,556 to 108,770 _06090 H281DRAFT_06091: H281DRAFT_06091 - Protein required for attachment to host cells, at 108,860 to 109,216 _06091 H281DRAFT_06092: H281DRAFT_06092 - Outer membrane protein (porin), at 109,545 to 110,672 _06092 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2at 108.082 kb on - strand, within H281DRAFT_06090at 108.097 kb on - strand, within H281DRAFT_06090at 108.166 kb on - strand, within H281DRAFT_06090at 108.216 kb on + strand, within H281DRAFT_06090at 108.217 kb on - strand, within H281DRAFT_06090at 108.369 kb on + strand, within H281DRAFT_06090at 108.406 kb on - strand, within H281DRAFT_06090at 108.769 kb on - strandat 108.928 kb on + strand, within H281DRAFT_06091at 109.031 kb on + strand, within H281DRAFT_06091at 109.031 kb on + strand, within H281DRAFT_06091at 109.032 kb on - strand, within H281DRAFT_06091at 109.071 kb on + strand, within H281DRAFT_06091at 109.235 kb on + strandat 109.236 kb on - strandat 109.236 kb on - strandat 109.245 kb on + strandat 109.324 kb on - strandat 109.337 kb on + strandat 109.430 kb on + strandat 109.495 kb on + strandat 109.539 kb on + strandat 109.626 kb on + strandat 109.626 kb on + strandat 109.653 kb on + strandat 109.842 kb on + strand, within H281DRAFT_06092at 109.843 kb on - strand, within H281DRAFT_06092at 109.893 kb on + strand, within H281DRAFT_06092at 109.971 kb on + strand, within H281DRAFT_06092at 109.972 kb on - strand, within H281DRAFT_06092at 109.994 kb on + strand, within H281DRAFT_06092at 109.994 kb on + strand, within H281DRAFT_06092at 109.994 kb on + strand, within H281DRAFT_06092at 110.038 kb on - strand, within H281DRAFT_06092at 110.064 kb on + strand, within H281DRAFT_06092at 110.064 kb on + strand, within H281DRAFT_06092at 110.064 kb on + strand, within H281DRAFT_06092at 110.065 kb on - strand, within H281DRAFT_06092at 110.065 kb on - strand, within H281DRAFT_06092at 110.065 kb on - strand, within H281DRAFT_06092at 110.065 kb on - strand, within H281DRAFT_06092at 110.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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108,082 - H281DRAFT_06090 0.43 +0.4
108,097 - H281DRAFT_06090 0.45 +1.3
108,166 - H281DRAFT_06090 0.50 -0.7
108,216 + H281DRAFT_06090 0.54 +1.3
108,217 - H281DRAFT_06090 0.54 -1.1
108,369 + H281DRAFT_06090 0.67 -0.2
108,406 - H281DRAFT_06090 0.70 +0.0
108,769 - -0.9
108,928 + H281DRAFT_06091 0.19 -0.0
109,031 + H281DRAFT_06091 0.48 -0.1
109,031 + H281DRAFT_06091 0.48 -0.4
109,032 - H281DRAFT_06091 0.48 +0.5
109,071 + H281DRAFT_06091 0.59 -0.2
109,235 + +0.1
109,236 - +0.5
109,236 - +0.2
109,245 + +0.6
109,324 - +0.1
109,337 + -2.1
109,430 + +0.6
109,495 + +0.1
109,539 + +1.7
109,626 + -0.8
109,626 + +0.0
109,653 + +0.8
109,842 + H281DRAFT_06092 0.26 -0.5
109,843 - H281DRAFT_06092 0.26 -1.0
109,893 + H281DRAFT_06092 0.31 -2.4
109,971 + H281DRAFT_06092 0.38 -0.2
109,972 - H281DRAFT_06092 0.38 -0.2
109,994 + H281DRAFT_06092 0.40 +2.6
109,994 + H281DRAFT_06092 0.40 -0.1
109,994 + H281DRAFT_06092 0.40 -2.0
110,038 - H281DRAFT_06092 0.44 +0.1
110,064 + H281DRAFT_06092 0.46 -0.4
110,064 + H281DRAFT_06092 0.46 -0.5
110,064 + H281DRAFT_06092 0.46 -0.4
110,065 - H281DRAFT_06092 0.46 +0.2
110,065 - H281DRAFT_06092 0.46 -2.5
110,065 - H281DRAFT_06092 0.46 -0.4
110,065 - H281DRAFT_06092 0.46 +0.5
110,199 - +0.4

Or see this region's nucleotide sequence