Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06078

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06077 and H281DRAFT_06078 are separated by 243 nucleotidesH281DRAFT_06078 and H281DRAFT_06079 are separated by 113 nucleotidesH281DRAFT_06079 and H281DRAFT_06080 are separated by 292 nucleotides H281DRAFT_06077: H281DRAFT_06077 - transcriptional regulator, LysR family, at 94,363 to 95,328 _06077 H281DRAFT_06078: H281DRAFT_06078 - protein of unknown function (DUF4148), at 95,572 to 95,883 _06078 H281DRAFT_06079: H281DRAFT_06079 - Uncharacterized membrane protein, DUF373 family, at 95,997 to 96,563 _06079 H281DRAFT_06080: H281DRAFT_06080 - thioredoxin reductase (NADPH), at 96,856 to 98,091 _06080 Position (kb) 95 96Strain fitness (log2 ratio) -2 -1 0 1at 94.653 kb on + strand, within H281DRAFT_06077at 94.678 kb on + strand, within H281DRAFT_06077at 94.678 kb on + strand, within H281DRAFT_06077at 94.678 kb on + strand, within H281DRAFT_06077at 94.678 kb on + strand, within H281DRAFT_06077at 94.679 kb on - strand, within H281DRAFT_06077at 94.679 kb on - strand, within H281DRAFT_06077at 94.702 kb on + strand, within H281DRAFT_06077at 94.703 kb on - strand, within H281DRAFT_06077at 94.856 kb on + strand, within H281DRAFT_06077at 94.877 kb on - strand, within H281DRAFT_06077at 95.129 kb on + strand, within H281DRAFT_06077at 95.146 kb on + strand, within H281DRAFT_06077at 95.338 kb on - strandat 95.338 kb on - strandat 95.341 kb on + strandat 95.341 kb on + strandat 95.341 kb on + strandat 95.341 kb on + strandat 95.342 kb on - strandat 95.342 kb on - strandat 95.342 kb on - strandat 95.342 kb on - strandat 95.342 kb on - strandat 95.499 kb on - strandat 95.502 kb on + strandat 95.503 kb on - strandat 95.539 kb on + strandat 95.564 kb on - strandat 95.567 kb on + strandat 95.567 kb on + strandat 95.568 kb on - strandat 95.568 kb on - strandat 95.669 kb on + strand, within H281DRAFT_06078at 95.811 kb on - strand, within H281DRAFT_06078at 95.869 kb on + strandat 95.870 kb on - strandat 95.889 kb on + strandat 96.201 kb on - strand, within H281DRAFT_06079at 96.203 kb on + strand, within H281DRAFT_06079at 96.203 kb on + strand, within H281DRAFT_06079at 96.241 kb on - strand, within H281DRAFT_06079at 96.349 kb on + strand, within H281DRAFT_06079at 96.349 kb on + strand, within H281DRAFT_06079at 96.537 kb on - strandat 96.630 kb on + strandat 96.705 kb on - strandat 96.774 kb on + strandat 96.775 kb on - strandat 96.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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94,653 + H281DRAFT_06077 0.30 +0.7
94,678 + H281DRAFT_06077 0.33 -2.1
94,678 + H281DRAFT_06077 0.33 -0.0
94,678 + H281DRAFT_06077 0.33 -0.0
94,678 + H281DRAFT_06077 0.33 +0.7
94,679 - H281DRAFT_06077 0.33 -0.6
94,679 - H281DRAFT_06077 0.33 +0.5
94,702 + H281DRAFT_06077 0.35 -0.7
94,703 - H281DRAFT_06077 0.35 +0.2
94,856 + H281DRAFT_06077 0.51 +0.1
94,877 - H281DRAFT_06077 0.53 +0.2
95,129 + H281DRAFT_06077 0.79 +0.2
95,146 + H281DRAFT_06077 0.81 +0.2
95,338 - +0.0
95,338 - -0.6
95,341 + -0.3
95,341 + -2.3
95,341 + +0.3
95,341 + -0.6
95,342 - +0.3
95,342 - -0.4
95,342 - -0.3
95,342 - +0.2
95,342 - -0.4
95,499 - +1.1
95,502 + -0.1
95,503 - -1.1
95,539 + -0.0
95,564 - -0.4
95,567 + -0.4
95,567 + +0.1
95,568 - -0.3
95,568 - +0.7
95,669 + H281DRAFT_06078 0.31 +0.8
95,811 - H281DRAFT_06078 0.77 +0.5
95,869 + -0.1
95,870 - -0.0
95,889 + -0.3
96,201 - H281DRAFT_06079 0.36 +0.3
96,203 + H281DRAFT_06079 0.36 +0.5
96,203 + H281DRAFT_06079 0.36 -1.6
96,241 - H281DRAFT_06079 0.43 +0.2
96,349 + H281DRAFT_06079 0.62 +0.8
96,349 + H281DRAFT_06079 0.62 +0.0
96,537 - -0.7
96,630 + +1.0
96,705 - +0.8
96,774 + +0.9
96,775 - -1.3
96,775 - +0.4

Or see this region's nucleotide sequence