Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02462

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02461 and H281DRAFT_02462 are separated by 93 nucleotidesH281DRAFT_02462 and H281DRAFT_02463 are separated by 180 nucleotides H281DRAFT_02461: H281DRAFT_02461 - MFS transporter, putative metabolite:H+ symporter, at 27,510 to 29,027 _02461 H281DRAFT_02462: H281DRAFT_02462 - beta-lactamase class C, at 29,121 to 30,302 _02462 H281DRAFT_02463: H281DRAFT_02463 - choline dehydrogenase, at 30,483 to 32,168 _02463 Position (kb) 29 30 31Strain fitness (log2 ratio) -1 0 1 2 3at 28.379 kb on - strand, within H281DRAFT_02461at 28.392 kb on + strand, within H281DRAFT_02461at 28.393 kb on - strand, within H281DRAFT_02461at 28.450 kb on - strand, within H281DRAFT_02461at 28.518 kb on + strand, within H281DRAFT_02461at 28.639 kb on - strand, within H281DRAFT_02461at 28.740 kb on + strand, within H281DRAFT_02461at 28.740 kb on + strand, within H281DRAFT_02461at 28.740 kb on + strand, within H281DRAFT_02461at 28.741 kb on - strand, within H281DRAFT_02461at 28.746 kb on + strand, within H281DRAFT_02461at 28.747 kb on - strand, within H281DRAFT_02461at 28.836 kb on + strand, within H281DRAFT_02461at 28.837 kb on - strand, within H281DRAFT_02461at 28.837 kb on - strand, within H281DRAFT_02461at 28.930 kb on + strandat 29.122 kb on + strandat 29.245 kb on + strand, within H281DRAFT_02462at 29.399 kb on - strand, within H281DRAFT_02462at 29.555 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.654 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.657 kb on - strand, within H281DRAFT_02462at 29.771 kb on - strand, within H281DRAFT_02462at 29.795 kb on - strand, within H281DRAFT_02462at 29.818 kb on + strand, within H281DRAFT_02462at 29.944 kb on + strand, within H281DRAFT_02462at 29.945 kb on - strand, within H281DRAFT_02462at 29.945 kb on - strand, within H281DRAFT_02462at 30.076 kb on - strand, within H281DRAFT_02462at 30.099 kb on + strand, within H281DRAFT_02462at 30.099 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.104 kb on - strand, within H281DRAFT_02462at 30.152 kb on - strand, within H281DRAFT_02462at 30.152 kb on - strand, within H281DRAFT_02462at 30.279 kb on + strandat 30.279 kb on + strandat 30.294 kb on + strandat 30.295 kb on - strandat 30.303 kb on - strandat 30.535 kb on + strandat 30.536 kb on - strandat 30.925 kb on + strand, within H281DRAFT_02463at 31.054 kb on + strand, within H281DRAFT_02463at 31.055 kb on - strand, within H281DRAFT_02463at 31.222 kb on + strand, within H281DRAFT_02463at 31.223 kb on - strand, within H281DRAFT_02463at 31.258 kb on + strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
28,379 - H281DRAFT_02461 0.57 +1.1
28,392 + H281DRAFT_02461 0.58 -0.1
28,393 - H281DRAFT_02461 0.58 -0.8
28,450 - H281DRAFT_02461 0.62 -0.2
28,518 + H281DRAFT_02461 0.66 +1.2
28,639 - H281DRAFT_02461 0.74 +2.8
28,740 + H281DRAFT_02461 0.81 +0.6
28,740 + H281DRAFT_02461 0.81 +0.2
28,740 + H281DRAFT_02461 0.81 +0.2
28,741 - H281DRAFT_02461 0.81 -0.1
28,746 + H281DRAFT_02461 0.81 -0.5
28,747 - H281DRAFT_02461 0.81 +0.2
28,836 + H281DRAFT_02461 0.87 -0.2
28,837 - H281DRAFT_02461 0.87 -0.7
28,837 - H281DRAFT_02461 0.87 +0.2
28,930 + +0.5
29,122 + -1.0
29,245 + H281DRAFT_02462 0.10 -0.2
29,399 - H281DRAFT_02462 0.24 +0.5
29,555 - H281DRAFT_02462 0.37 -0.3
29,610 - H281DRAFT_02462 0.41 -0.1
29,610 - H281DRAFT_02462 0.41 -0.5
29,610 - H281DRAFT_02462 0.41 +0.6
29,654 + H281DRAFT_02462 0.45 -0.0
29,656 + H281DRAFT_02462 0.45 +0.4
29,656 + H281DRAFT_02462 0.45 +0.4
29,656 + H281DRAFT_02462 0.45 +0.1
29,656 + H281DRAFT_02462 0.45 -0.2
29,656 + H281DRAFT_02462 0.45 -0.1
29,657 - H281DRAFT_02462 0.45 -1.3
29,771 - H281DRAFT_02462 0.55 -0.5
29,795 - H281DRAFT_02462 0.57 -1.0
29,818 + H281DRAFT_02462 0.59 +1.1
29,944 + H281DRAFT_02462 0.70 -1.6
29,945 - H281DRAFT_02462 0.70 -0.3
29,945 - H281DRAFT_02462 0.70 +0.2
30,076 - H281DRAFT_02462 0.81 +0.7
30,099 + H281DRAFT_02462 0.83 +0.9
30,099 + H281DRAFT_02462 0.83 -0.7
30,103 + H281DRAFT_02462 0.83 +0.7
30,103 + H281DRAFT_02462 0.83 -0.8
30,103 + H281DRAFT_02462 0.83 +0.4
30,103 + H281DRAFT_02462 0.83 +0.2
30,104 - H281DRAFT_02462 0.83 -0.0
30,152 - H281DRAFT_02462 0.87 -0.1
30,152 - H281DRAFT_02462 0.87 -0.3
30,279 + +0.4
30,279 + -0.7
30,294 + +0.4
30,295 - +0.8
30,303 - +0.6
30,535 + +0.5
30,536 - -1.1
30,925 + H281DRAFT_02463 0.26 +0.7
31,054 + H281DRAFT_02463 0.34 +0.4
31,055 - H281DRAFT_02463 0.34 +0.5
31,222 + H281DRAFT_02463 0.44 -0.1
31,223 - H281DRAFT_02463 0.44 +0.4
31,258 + H281DRAFT_02463 0.46 +0.9
31,259 - H281DRAFT_02463 0.46 +0.4
31,259 - H281DRAFT_02463 0.46 +0.2
31,259 - H281DRAFT_02463 0.46 +1.9

Or see this region's nucleotide sequence