Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01449

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01448 and H281DRAFT_01449 are separated by 686 nucleotidesH281DRAFT_01449 and H281DRAFT_01450 are separated by 40 nucleotides H281DRAFT_01448: H281DRAFT_01448 - high affinity sulphate transporter 1, at 310,294 to 311,991 _01448 H281DRAFT_01449: H281DRAFT_01449 - RIO kinase 1, at 312,678 to 313,535 _01449 H281DRAFT_01450: H281DRAFT_01450 - transcriptional regulator, LacI family, at 313,576 to 314,628 _01450 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1at 312.081 kb on + strandat 312.101 kb on + strandat 312.102 kb on - strandat 312.329 kb on + strandat 312.332 kb on + strandat 312.587 kb on + strandat 312.707 kb on - strandat 312.813 kb on + strand, within H281DRAFT_01449at 313.095 kb on - strand, within H281DRAFT_01449at 313.152 kb on - strand, within H281DRAFT_01449at 313.191 kb on + strand, within H281DRAFT_01449at 313.191 kb on + strand, within H281DRAFT_01449at 313.534 kb on - strandat 313.782 kb on - strand, within H281DRAFT_01450at 314.411 kb on + strand, within H281DRAFT_01450at 314.412 kb on - strand, within H281DRAFT_01450

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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312,081 + +1.7
312,101 + +0.2
312,102 - +0.4
312,329 + -0.6
312,332 + -0.0
312,587 + -0.4
312,707 - -0.9
312,813 + H281DRAFT_01449 0.16 +1.7
313,095 - H281DRAFT_01449 0.49 -3.3
313,152 - H281DRAFT_01449 0.55 -0.9
313,191 + H281DRAFT_01449 0.60 +0.6
313,191 + H281DRAFT_01449 0.60 -1.3
313,534 - +0.5
313,782 - H281DRAFT_01450 0.20 +0.1
314,411 + H281DRAFT_01450 0.79 -0.6
314,412 - H281DRAFT_01450 0.79 -0.7

Or see this region's nucleotide sequence