Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01198

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01197 and H281DRAFT_01198 are separated by 83 nucleotidesH281DRAFT_01198 and H281DRAFT_01199 are separated by 37 nucleotides H281DRAFT_01197: H281DRAFT_01197 - NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains, at 34,391 to 35,215 _01197 H281DRAFT_01198: H281DRAFT_01198 - Predicted arabinose efflux permease, MFS family, at 35,299 to 36,561 _01198 H281DRAFT_01199: H281DRAFT_01199 - Enoyl-CoA hydratase/carnithine racemase, at 36,599 to 37,759 _01199 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 35.046 kb on - strand, within H281DRAFT_01197at 35.046 kb on - strand, within H281DRAFT_01197at 35.046 kb on - strand, within H281DRAFT_01197at 35.046 kb on - strand, within H281DRAFT_01197at 35.074 kb on - strand, within H281DRAFT_01197at 35.223 kb on - strandat 35.273 kb on + strandat 35.273 kb on + strandat 35.274 kb on - strandat 35.275 kb on + strandat 35.503 kb on + strand, within H281DRAFT_01198at 35.503 kb on + strand, within H281DRAFT_01198at 35.503 kb on + strand, within H281DRAFT_01198at 35.504 kb on - strand, within H281DRAFT_01198at 35.545 kb on + strand, within H281DRAFT_01198at 35.545 kb on + strand, within H281DRAFT_01198at 35.545 kb on + strand, within H281DRAFT_01198at 35.545 kb on + strand, within H281DRAFT_01198at 35.907 kb on - strand, within H281DRAFT_01198at 35.946 kb on + strand, within H281DRAFT_01198at 35.947 kb on - strand, within H281DRAFT_01198at 35.988 kb on + strand, within H281DRAFT_01198at 36.062 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.065 kb on - strand, within H281DRAFT_01198at 36.065 kb on - strand, within H281DRAFT_01198at 36.065 kb on - strand, within H281DRAFT_01198at 36.214 kb on + strand, within H281DRAFT_01198at 36.214 kb on + strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.388 kb on - strand, within H281DRAFT_01198at 36.388 kb on - strand, within H281DRAFT_01198at 36.842 kb on + strand, within H281DRAFT_01199at 36.843 kb on - strand, within H281DRAFT_01199at 36.865 kb on - strand, within H281DRAFT_01199at 36.865 kb on - strand, within H281DRAFT_01199at 36.865 kb on - strand, within H281DRAFT_01199at 36.900 kb on + strandat 36.901 kb on - strand, within H281DRAFT_01199at 37.224 kb on + strand, within H281DRAFT_01199at 37.224 kb on + strand, within H281DRAFT_01199

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
35,046 - H281DRAFT_01197 0.79 -0.0
35,046 - H281DRAFT_01197 0.79 +1.4
35,046 - H281DRAFT_01197 0.79 +0.5
35,046 - H281DRAFT_01197 0.79 -0.3
35,074 - H281DRAFT_01197 0.83 -0.6
35,223 - -0.1
35,273 + -0.4
35,273 + +0.1
35,274 - +1.5
35,275 + +0.1
35,503 + H281DRAFT_01198 0.16 -1.9
35,503 + H281DRAFT_01198 0.16 -2.3
35,503 + H281DRAFT_01198 0.16 -0.1
35,504 - H281DRAFT_01198 0.16 +0.6
35,545 + H281DRAFT_01198 0.19 +0.1
35,545 + H281DRAFT_01198 0.19 -1.0
35,545 + H281DRAFT_01198 0.19 +0.3
35,545 + H281DRAFT_01198 0.19 +0.4
35,907 - H281DRAFT_01198 0.48 +0.2
35,946 + H281DRAFT_01198 0.51 +0.0
35,947 - H281DRAFT_01198 0.51 -0.2
35,988 + H281DRAFT_01198 0.55 +0.1
36,062 + H281DRAFT_01198 0.60 -0.2
36,064 + H281DRAFT_01198 0.61 +0.1
36,064 + H281DRAFT_01198 0.61 +0.0
36,064 + H281DRAFT_01198 0.61 -0.8
36,064 + H281DRAFT_01198 0.61 -0.1
36,064 + H281DRAFT_01198 0.61 -0.2
36,064 + H281DRAFT_01198 0.61 -0.3
36,064 + H281DRAFT_01198 0.61 -0.3
36,065 - H281DRAFT_01198 0.61 +1.0
36,065 - H281DRAFT_01198 0.61 +0.1
36,065 - H281DRAFT_01198 0.61 -0.9
36,214 + H281DRAFT_01198 0.72 +0.0
36,214 + H281DRAFT_01198 0.72 -0.2
36,215 - H281DRAFT_01198 0.73 +0.0
36,215 - H281DRAFT_01198 0.73 +0.6
36,215 - H281DRAFT_01198 0.73 +0.3
36,215 - H281DRAFT_01198 0.73 +0.4
36,388 - H281DRAFT_01198 0.86 -0.0
36,388 - H281DRAFT_01198 0.86 +0.5
36,842 + H281DRAFT_01199 0.21 -0.6
36,843 - H281DRAFT_01199 0.21 -0.8
36,865 - H281DRAFT_01199 0.23 -0.4
36,865 - H281DRAFT_01199 0.23 +0.2
36,865 - H281DRAFT_01199 0.23 +0.2
36,900 + +0.9
36,901 - H281DRAFT_01199 0.26 +0.9
37,224 + H281DRAFT_01199 0.54 +0.5
37,224 + H281DRAFT_01199 0.54 +0.2

Or see this region's nucleotide sequence