Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01174

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01173 and H281DRAFT_01174 are separated by 388 nucleotidesH281DRAFT_01174 and H281DRAFT_01175 are separated by 182 nucleotidesH281DRAFT_01175 and H281DRAFT_01176 are separated by 163 nucleotides H281DRAFT_01173: H281DRAFT_01173 - Outer membrane protein (porin), at 6,621 to 7,811 _01173 H281DRAFT_01174: H281DRAFT_01174 - Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase), at 8,200 to 9,261 _01174 H281DRAFT_01175: H281DRAFT_01175 - hypothetical protein, at 9,444 to 9,623 _01175 H281DRAFT_01176: H281DRAFT_01176 - fatty-acyl-CoA synthase, at 9,787 to 11,442 _01176 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1at 7.204 kb on + strand, within H281DRAFT_01173at 7.222 kb on + strand, within H281DRAFT_01173at 7.709 kb on - strandat 7.738 kb on - strandat 8.120 kb on + strandat 8.150 kb on - strandat 8.823 kb on - strand, within H281DRAFT_01174at 8.866 kb on + strand, within H281DRAFT_01174at 8.866 kb on + strand, within H281DRAFT_01174at 8.977 kb on - strand, within H281DRAFT_01174at 8.977 kb on - strand, within H281DRAFT_01174at 9.113 kb on + strand, within H281DRAFT_01174at 9.114 kb on - strand, within H281DRAFT_01174at 9.402 kb on - strandat 9.436 kb on - strandat 9.436 kb on - strandat 9.850 kb on + strandat 10.005 kb on + strand, within H281DRAFT_01176at 10.028 kb on - strand, within H281DRAFT_01176at 10.028 kb on - strand, within H281DRAFT_01176at 10.030 kb on + strand, within H281DRAFT_01176at 10.100 kb on - strand, within H281DRAFT_01176

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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7,204 + H281DRAFT_01173 0.49 -0.1
7,222 + H281DRAFT_01173 0.50 +0.2
7,709 - -0.6
7,738 - -0.1
8,120 + -0.1
8,150 - -0.4
8,823 - H281DRAFT_01174 0.59 -0.5
8,866 + H281DRAFT_01174 0.63 -0.3
8,866 + H281DRAFT_01174 0.63 -0.9
8,977 - H281DRAFT_01174 0.73 +0.1
8,977 - H281DRAFT_01174 0.73 -0.8
9,113 + H281DRAFT_01174 0.86 +1.5
9,114 - H281DRAFT_01174 0.86 -0.2
9,402 - -0.5
9,436 - -0.8
9,436 - +0.6
9,850 + -0.2
10,005 + H281DRAFT_01176 0.13 -0.2
10,028 - H281DRAFT_01176 0.15 +0.1
10,028 - H281DRAFT_01176 0.15 -0.5
10,030 + H281DRAFT_01176 0.15 +0.4
10,100 - H281DRAFT_01176 0.19 -1.0

Or see this region's nucleotide sequence