Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00663

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00662 and H281DRAFT_00663 are separated by 643 nucleotidesH281DRAFT_00663 and H281DRAFT_00664 overlap by 4 nucleotides H281DRAFT_00662: H281DRAFT_00662 - Short-chain dehydrogenase, at 741,334 to 742,167 _00662 H281DRAFT_00663: H281DRAFT_00663 - assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4), at 742,811 to 743,158 _00663 H281DRAFT_00664: H281DRAFT_00664 - assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1), at 743,155 to 744,426 _00664 Position (kb) 742 743 744Strain fitness (log2 ratio) -1 0 1 2 3at 742.206 kb on - strandat 742.669 kb on + strandat 742.786 kb on + strandat 742.786 kb on + strandat 742.787 kb on - strandat 742.787 kb on - strandat 742.787 kb on - strandat 742.791 kb on - strandat 742.791 kb on - strandat 742.877 kb on - strand, within H281DRAFT_00663at 742.911 kb on + strand, within H281DRAFT_00663at 742.918 kb on - strand, within H281DRAFT_00663at 743.192 kb on + strandat 744.022 kb on + strand, within H281DRAFT_00664at 744.022 kb on + strand, within H281DRAFT_00664

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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742,206 - +0.5
742,669 + +2.8
742,786 + +0.6
742,786 + +0.5
742,787 - -1.6
742,787 - +0.8
742,787 - +0.4
742,791 - -1.2
742,791 - -0.5
742,877 - H281DRAFT_00663 0.19 -1.0
742,911 + H281DRAFT_00663 0.29 -0.6
742,918 - H281DRAFT_00663 0.31 -0.1
743,192 + +0.2
744,022 + H281DRAFT_00664 0.68 +0.5
744,022 + H281DRAFT_00664 0.68 +0.0

Or see this region's nucleotide sequence