Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00492

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00490 and H281DRAFT_00491 overlap by 8 nucleotidesH281DRAFT_00491 and H281DRAFT_00492 are separated by 93 nucleotidesH281DRAFT_00492 and H281DRAFT_00493 are separated by 124 nucleotides H281DRAFT_00490: H281DRAFT_00490 - lipoprotein-releasing system permease protein, at 549,398 to 550,651 _00490 H281DRAFT_00491: H281DRAFT_00491 - lipoprotein-releasing system ATP-binding protein, at 550,644 to 551,387 _00491 H281DRAFT_00492: H281DRAFT_00492 - TatD DNase family protein, at 551,481 to 552,269 _00492 H281DRAFT_00493: H281DRAFT_00493 - competence protein ComEC, at 552,394 to 555,198 _00493 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1at 551.385 kb on + strandat 551.447 kb on - strandat 551.447 kb on - strandat 551.781 kb on + strand, within H281DRAFT_00492at 551.781 kb on + strand, within H281DRAFT_00492at 551.782 kb on - strand, within H281DRAFT_00492at 551.824 kb on - strand, within H281DRAFT_00492at 551.836 kb on + strand, within H281DRAFT_00492at 551.837 kb on - strand, within H281DRAFT_00492at 551.899 kb on + strand, within H281DRAFT_00492at 551.979 kb on + strand, within H281DRAFT_00492at 551.980 kb on - strand, within H281DRAFT_00492at 551.980 kb on - strand, within H281DRAFT_00492at 551.980 kb on - strand, within H281DRAFT_00492at 551.982 kb on - strand, within H281DRAFT_00492at 551.993 kb on + strand, within H281DRAFT_00492at 552.124 kb on - strand, within H281DRAFT_00492at 552.124 kb on - strand, within H281DRAFT_00492at 552.124 kb on - strand, within H281DRAFT_00492at 552.211 kb on + strandat 552.267 kb on + strandat 552.267 kb on + strandat 552.267 kb on + strandat 552.399 kb on + strandat 552.399 kb on + strandat 552.399 kb on + strandat 552.399 kb on + strandat 552.399 kb on + strandat 552.399 kb on + strandat 552.400 kb on - strandat 552.400 kb on - strandat 552.400 kb on - strandat 552.400 kb on - strandat 552.400 kb on - strandat 552.762 kb on + strand, within H281DRAFT_00493at 552.763 kb on - strand, within H281DRAFT_00493at 553.016 kb on - strand, within H281DRAFT_00493

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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551,385 + -0.1
551,447 - -0.0
551,447 - -1.5
551,781 + H281DRAFT_00492 0.38 -0.0
551,781 + H281DRAFT_00492 0.38 +1.3
551,782 - H281DRAFT_00492 0.38 +0.5
551,824 - H281DRAFT_00492 0.43 +0.5
551,836 + H281DRAFT_00492 0.45 +0.4
551,837 - H281DRAFT_00492 0.45 +0.1
551,899 + H281DRAFT_00492 0.53 -0.6
551,979 + H281DRAFT_00492 0.63 -0.4
551,980 - H281DRAFT_00492 0.63 -2.2
551,980 - H281DRAFT_00492 0.63 +0.3
551,980 - H281DRAFT_00492 0.63 -0.6
551,982 - H281DRAFT_00492 0.63 +0.2
551,993 + H281DRAFT_00492 0.65 -0.6
552,124 - H281DRAFT_00492 0.81 -0.4
552,124 - H281DRAFT_00492 0.81 +0.0
552,124 - H281DRAFT_00492 0.81 -0.1
552,211 + +0.1
552,267 + -1.1
552,267 + +0.8
552,267 + -0.0
552,399 + -0.5
552,399 + -0.6
552,399 + +0.4
552,399 + -1.3
552,399 + +0.1
552,399 + -0.6
552,400 - -1.3
552,400 - -0.0
552,400 - -0.4
552,400 - +0.4
552,400 - +0.2
552,762 + H281DRAFT_00493 0.13 +0.1
552,763 - H281DRAFT_00493 0.13 -1.7
553,016 - H281DRAFT_00493 0.22 +0.5

Or see this region's nucleotide sequence