Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0622

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0620 and Ga0059261_0621 are separated by 57 nucleotidesGa0059261_0621 and Ga0059261_0622 overlap by 4 nucleotidesGa0059261_0622 and Ga0059261_0623 are separated by 50 nucleotides Ga0059261_0620: Ga0059261_0620 - Outer membrane cobalamin receptor protein, at 659,926 to 661,821 _0620 Ga0059261_0621: Ga0059261_0621 - cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17), at 661,879 to 662,487 _0621 Ga0059261_0622: Ga0059261_0622 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 662,484 to 663,323 _0622 Ga0059261_0623: Ga0059261_0623 - ABC-type Fe3+-siderophore transport system, permease component, at 663,374 to 664,369 _0623 Position (kb) 662 663 664Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 661.486 kb on + strand, within Ga0059261_0620at 661.486 kb on + strand, within Ga0059261_0620at 661.486 kb on + strand, within Ga0059261_0620at 661.486 kb on + strand, within Ga0059261_0620at 661.486 kb on + strand, within Ga0059261_0620at 661.486 kb on + strand, within Ga0059261_0620at 661.487 kb on - strand, within Ga0059261_0620at 661.487 kb on - strand, within Ga0059261_0620at 661.487 kb on - strand, within Ga0059261_0620at 661.526 kb on + strand, within Ga0059261_0620at 661.526 kb on + strand, within Ga0059261_0620at 661.526 kb on + strand, within Ga0059261_0620at 661.526 kb on + strand, within Ga0059261_0620at 661.526 kb on + strand, within Ga0059261_0620at 661.526 kb on + strand, within Ga0059261_0620at 661.527 kb on - strand, within Ga0059261_0620at 661.527 kb on - strand, within Ga0059261_0620at 661.532 kb on + strand, within Ga0059261_0620at 661.532 kb on + strand, within Ga0059261_0620at 661.532 kb on + strand, within Ga0059261_0620at 661.532 kb on + strand, within Ga0059261_0620at 661.533 kb on - strand, within Ga0059261_0620at 661.666 kb on + strandat 661.666 kb on + strandat 661.667 kb on - strandat 661.667 kb on - strandat 661.667 kb on - strandat 661.667 kb on - strandat 661.701 kb on + strandat 661.710 kb on + strandat 661.710 kb on + strandat 661.710 kb on + strandat 661.711 kb on - strandat 661.720 kb on + strandat 661.720 kb on + strandat 661.720 kb on + strandat 661.720 kb on + strandat 661.721 kb on - strandat 661.754 kb on - strandat 661.755 kb on + strandat 661.795 kb on + strandat 661.795 kb on + strandat 662.255 kb on - strand, within Ga0059261_0621at 662.255 kb on - strand, within Ga0059261_0621at 662.255 kb on - strand, within Ga0059261_0621at 662.296 kb on + strand, within Ga0059261_0621at 662.296 kb on + strand, within Ga0059261_0621at 662.297 kb on - strand, within Ga0059261_0621at 662.302 kb on + strandat 662.302 kb on + strand, within Ga0059261_0621at 662.302 kb on + strand, within Ga0059261_0621at 662.303 kb on - strand, within Ga0059261_0621at 662.303 kb on - strand, within Ga0059261_0621at 662.303 kb on - strand, within Ga0059261_0621at 662.303 kb on - strand, within Ga0059261_0621at 662.533 kb on + strandat 662.533 kb on + strandat 662.533 kb on + strandat 662.533 kb on + strandat 662.534 kb on - strandat 662.585 kb on + strand, within Ga0059261_0622at 662.585 kb on + strand, within Ga0059261_0622at 662.679 kb on + strand, within Ga0059261_0622at 662.680 kb on - strand, within Ga0059261_0622at 662.809 kb on + strand, within Ga0059261_0622at 662.810 kb on - strand, within Ga0059261_0622at 662.810 kb on - strand, within Ga0059261_0622at 662.810 kb on - strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.813 kb on - strand, within Ga0059261_0622at 662.947 kb on + strand, within Ga0059261_0622at 662.948 kb on - strand, within Ga0059261_0622at 662.948 kb on - strand, within Ga0059261_0622at 662.959 kb on + strand, within Ga0059261_0622at 662.960 kb on - strand, within Ga0059261_0622at 662.960 kb on - strand, within Ga0059261_0622at 663.239 kb on + strand, within Ga0059261_0622at 663.335 kb on + strandat 663.336 kb on - strandat 663.336 kb on - strandat 663.692 kb on + strand, within Ga0059261_0623at 663.692 kb on + strand, within Ga0059261_0623at 663.693 kb on - strand, within Ga0059261_0623at 663.970 kb on + strand, within Ga0059261_0623at 663.970 kb on + strand, within Ga0059261_0623at 663.971 kb on - strand, within Ga0059261_0623at 664.147 kb on + strand, within Ga0059261_0623at 664.148 kb on - strand, within Ga0059261_0623

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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661,486 + Ga0059261_0620 0.82 -2.9
661,486 + Ga0059261_0620 0.82 -0.4
661,486 + Ga0059261_0620 0.82 -2.0
661,486 + Ga0059261_0620 0.82 -1.7
661,486 + Ga0059261_0620 0.82 -1.5
661,486 + Ga0059261_0620 0.82 -0.1
661,487 - Ga0059261_0620 0.82 -2.1
661,487 - Ga0059261_0620 0.82 -3.5
661,487 - Ga0059261_0620 0.82 -0.1
661,526 + Ga0059261_0620 0.84 -1.6
661,526 + Ga0059261_0620 0.84 -1.5
661,526 + Ga0059261_0620 0.84 -1.1
661,526 + Ga0059261_0620 0.84 -0.4
661,526 + Ga0059261_0620 0.84 -2.5
661,526 + Ga0059261_0620 0.84 -0.3
661,527 - Ga0059261_0620 0.84 -0.7
661,527 - Ga0059261_0620 0.84 -0.2
661,532 + Ga0059261_0620 0.85 +0.6
661,532 + Ga0059261_0620 0.85 -1.5
661,532 + Ga0059261_0620 0.85 -1.8
661,532 + Ga0059261_0620 0.85 -3.0
661,533 - Ga0059261_0620 0.85 -0.3
661,666 + -2.0
661,666 + -1.1
661,667 - -2.4
661,667 - -1.2
661,667 - -3.3
661,667 - -2.4
661,701 + -0.4
661,710 + -2.1
661,710 + +0.4
661,710 + -0.4
661,711 - -0.8
661,720 + +0.1
661,720 + -2.6
661,720 + +1.1
661,720 + +0.8
661,721 - -0.9
661,754 - -0.4
661,755 + -1.3
661,795 + -1.6
661,795 + -1.8
662,255 - Ga0059261_0621 0.62 +0.4
662,255 - Ga0059261_0621 0.62 -1.0
662,255 - Ga0059261_0621 0.62 -1.1
662,296 + Ga0059261_0621 0.68 -1.1
662,296 + Ga0059261_0621 0.68 -0.4
662,297 - Ga0059261_0621 0.69 +0.4
662,302 + +0.6
662,302 + Ga0059261_0621 0.69 +2.2
662,302 + Ga0059261_0621 0.69 -0.0
662,303 - Ga0059261_0621 0.70 -1.1
662,303 - Ga0059261_0621 0.70 -0.3
662,303 - Ga0059261_0621 0.70 +0.2
662,303 - Ga0059261_0621 0.70 -0.9
662,533 + -2.7
662,533 + -2.4
662,533 + -1.6
662,533 + -2.8
662,534 - -3.1
662,585 + Ga0059261_0622 0.12 -3.1
662,585 + Ga0059261_0622 0.12 -2.1
662,679 + Ga0059261_0622 0.23 -0.4
662,680 - Ga0059261_0622 0.23 -1.1
662,809 + Ga0059261_0622 0.39 -3.3
662,810 - Ga0059261_0622 0.39 -2.8
662,810 - Ga0059261_0622 0.39 -4.3
662,810 - Ga0059261_0622 0.39 -2.4
662,812 + Ga0059261_0622 0.39 -2.2
662,812 + Ga0059261_0622 0.39 -1.4
662,812 + Ga0059261_0622 0.39 -1.9
662,812 + Ga0059261_0622 0.39 -3.0
662,812 + Ga0059261_0622 0.39 -1.2
662,813 - Ga0059261_0622 0.39 -3.1
662,947 + Ga0059261_0622 0.55 -2.2
662,948 - Ga0059261_0622 0.55 -2.3
662,948 - Ga0059261_0622 0.55 -1.9
662,959 + Ga0059261_0622 0.57 -3.5
662,960 - Ga0059261_0622 0.57 -1.3
662,960 - Ga0059261_0622 0.57 -1.1
663,239 + Ga0059261_0622 0.90 -2.9
663,335 + -1.1
663,336 - -2.0
663,336 - -0.8
663,692 + Ga0059261_0623 0.32 +0.1
663,692 + Ga0059261_0623 0.32 -1.2
663,693 - Ga0059261_0623 0.32 -2.7
663,970 + Ga0059261_0623 0.60 -2.4
663,970 + Ga0059261_0623 0.60 -3.5
663,971 - Ga0059261_0623 0.60 -1.6
664,147 + Ga0059261_0623 0.78 -3.2
664,148 - Ga0059261_0623 0.78 -2.6

Or see this region's nucleotide sequence