Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03741

Experiment: PYE 0.5x 4C survival rep3 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep3 58 days
3,909,672	+				-2.3
3,909,688	-				-0.3
3,909,724	-		CCNA_03740	0.12	-0.1
3,909,735	-		CCNA_03740	0.13	-0.9
3,909,759	-		CCNA_03740	0.16	+0.2
3,909,798	+		CCNA_03740	0.20	-1.1
3,909,798	+		CCNA_03740	0.20	-1.0
3,909,811	-		CCNA_03740	0.21	-0.7
3,909,904	+		CCNA_03740	0.30	-2.8
3,909,912	-		CCNA_03740	0.31	-0.4
3,909,927	+		CCNA_03740	0.33	-2.4
3,909,956	-		CCNA_03740	0.36	-0.8
3,909,990	-		CCNA_03740	0.39	-1.2
3,910,005	+		CCNA_03740	0.41	-1.6
3,910,049	-		CCNA_03740	0.45	+0.1
3,910,059	-		CCNA_03740	0.46	-0.9
3,910,100	-		CCNA_03740	0.50	-0.4
3,910,146	-		CCNA_03740	0.55	-3.8
3,910,163	+		CCNA_03740	0.57	+0.2
3,910,163	+		CCNA_03740	0.57	-1.1
3,910,172	+		CCNA_03740	0.57	-1.9
3,910,189	+		CCNA_03740	0.59	-1.0
3,910,249	-		CCNA_03740	0.65	+1.4
3,910,266	-		CCNA_03740	0.67	-0.4
3,910,287	+		CCNA_03740	0.69	-2.3
3,910,287	+		CCNA_03740	0.69	-1.8
3,910,292	+		CCNA_03740	0.70	-0.6
3,910,308	+		CCNA_03740	0.71	-2.2
3,910,355	+		CCNA_03740	0.76	-3.4
3,910,451	-		CCNA_03740	0.86	+0.9
3,910,457	-		CCNA_03740	0.86	-0.6
3,910,532	-				-2.7
3,910,563	+				-2.9
3,910,563	+				-1.5
3,910,571	-				+0.8
3,910,584	-				-0.9
3,910,589	-				-0.7
3,910,594	-				-0.2
3,910,599	+				-1.3
3,910,599	+				+0.9
3,910,599	+				+0.8
3,910,599	+				-0.8
3,910,599	+				-1.1
3,910,599	+				+1.2
3,910,599	+				-0.4
3,910,607	-				+0.7
3,910,607	-				-0.0
3,910,607	-				+0.3
3,910,618	-				+1.4
3,910,627	+				-0.3
3,910,627	+				-1.6
3,910,627	+				-2.6
3,910,627	+				-1.2
3,910,635	-				-0.4
3,910,635	-				+0.2
3,910,635	-				+1.9
3,910,635	-				+0.2
3,910,664	-				+0.1
3,910,711	+				-0.4
3,910,733	-				-2.8
3,910,761	-				-1.9
3,910,774	-		CCNA_03741	0.10	-1.5
3,910,774	-		CCNA_03741	0.10	-3.1
3,910,788	-		CCNA_03741	0.11	-2.2
3,910,842	-		CCNA_03741	0.16	-1.7
3,910,847	-		CCNA_03741	0.17	-2.7
3,910,847	-		CCNA_03741	0.17	-2.6
3,910,847	-		CCNA_03741	0.17	-1.8
3,910,931	-		CCNA_03741	0.24	-0.6
3,910,944	-		CCNA_03741	0.25	-2.5
3,910,963	-		CCNA_03741	0.27	-2.8
3,911,090	-		CCNA_03741	0.38	-2.0
3,911,100	-		CCNA_03741	0.39	-2.0
3,911,131	-		CCNA_03741	0.42	-2.7
3,911,136	-		CCNA_03741	0.42	-0.8
3,911,195	-		CCNA_03741	0.48	-1.7
3,911,258	+		CCNA_03741	0.53	+0.6
3,911,292	+		CCNA_03741	0.56	-2.3
3,911,296	-		CCNA_03741	0.57	-3.9
3,911,300	-		CCNA_03741	0.57	-0.9
3,911,300	-		CCNA_03741	0.57	-0.8
3,911,357	+		CCNA_03741	0.62	-0.4
3,911,359	+		CCNA_03741	0.62	+2.2
3,911,359	+				-2.2
3,911,367	-		CCNA_03741	0.63	-1.1
3,911,413	-		CCNA_03741	0.67	-2.4
3,911,503	-		CCNA_03741	0.75	-3.1
3,911,508	+		CCNA_03741	0.75	-0.8
3,911,508	+		CCNA_03741	0.75	+0.2
3,911,516	-		CCNA_03741	0.76	-1.5
3,911,516	-		CCNA_03741	0.76	-1.6
3,911,516	-		CCNA_03741	0.76	-0.1
3,911,565	+		CCNA_03741	0.81	-0.4
3,911,565	+		CCNA_03741	0.81	-2.5
3,911,568	-		CCNA_03741	0.81	-2.9
3,911,625	+		CCNA_03741	0.86	-1.0
3,911,724	-				+0.6
3,911,725	-				-1.0
3,911,788	+				-1.3
3,911,793	+				+1.2
3,911,801	-				-1.4
3,911,823	+				-2.2
3,911,823	+				-1.4
3,911,823	+				-0.1
3,911,828	+				-1.9
3,911,831	-				-1.0
3,911,831	-				-2.0
3,911,843	+				+0.1
3,911,851	-				-1.5
3,911,863	+				-0.5
3,911,866	-				-1.1
3,911,866	-				-2.0
3,911,866	-				+0.6
3,911,882	+		CCNA_03742	0.12	-2.5
3,911,948	-		CCNA_03742	0.27	-1.2
3,911,968	+		CCNA_03742	0.31	+3.2
3,911,976	-		CCNA_03742	0.33	-1.3
3,911,976	-		CCNA_03742	0.33	+0.1
3,911,978	+		CCNA_03742	0.34	-0.5
3,911,981	-		CCNA_03742	0.34	+0.6
3,911,981	-		CCNA_03742	0.34	+1.5
3,911,983	+		CCNA_03742	0.35	-2.8
3,911,983	+		CCNA_03742	0.35	+0.4
3,911,983	+		CCNA_03742	0.35	+0.8
3,911,991	-		CCNA_03742	0.37	-2.7
3,911,991	-		CCNA_03742	0.37	-0.1
3,911,991	-		CCNA_03742	0.37	+0.2
3,911,991	-		CCNA_03742	0.37	+0.2
3,911,991	-		CCNA_03742	0.37	-1.3
3,911,993	+		CCNA_03742	0.37	-1.6
3,912,017	+		CCNA_03742	0.43	-1.3
3,912,025	-		CCNA_03742	0.45	-1.5
3,912,025	-		CCNA_03742	0.45	-0.0
3,912,025	-		CCNA_03742	0.45	-0.9
3,912,044	-		CCNA_03742	0.49	-0.9
3,912,044	-		CCNA_03742	0.49	+0.6
3,912,044	-		CCNA_03742	0.49	+0.1
3,912,190	+		CCNA_03742	0.83	-0.4
3,912,190	+		CCNA_03742	0.83	+0.1
3,912,190	+		CCNA_03742	0.83	-0.7
3,912,198	-		CCNA_03742	0.84	+0.2
3,912,198	-		CCNA_03742	0.84	-0.1
3,912,210	+		CCNA_03742	0.87	-0.4
3,912,220	-		CCNA_03742	0.89	-0.0
3,912,220	-		CCNA_03742	0.89	-0.7
3,912,242	-				+0.8
3,912,242	-				-1.1
3,912,253	+				+1.2
3,912,261	-				+1.3
3,912,269	+				-1.3
3,912,298	-				+1.1
3,912,327	-				+0.0
3,912,327	-				+0.3
3,912,337	+				-3.1
3,912,338	+				+0.4
3,912,338	+				+1.3
3,912,343	+				+2.0
3,912,346	-				+1.0
3,912,346	-				-1.5
3,912,386	+				-0.1
3,912,386	+				+1.4
3,912,386	+				+0.7
3,912,386	+				-1.9
3,912,394	-				+0.2
3,912,394	-				+1.6
3,912,394	-				-0.1
3,912,413	+		CCNA_03743	0.10	-1.3
3,912,455	+		CCNA_03743	0.13	-2.7
3,912,463	-		CCNA_03743	0.14	+1.9
3,912,489	+		CCNA_03743	0.16	+2.3
3,912,512	-		CCNA_03743	0.17	-1.1
3,912,516	+		CCNA_03743	0.18	-0.6
3,912,518	+		CCNA_03743	0.18	-1.3
3,912,552	+		CCNA_03743	0.20	-0.2
3,912,553	+		CCNA_03743	0.20	-0.1
3,912,560	+		CCNA_03743	0.21	+0.9
3,912,575	+		CCNA_03743	0.22	+0.4
3,912,575	+		CCNA_03743	0.22	+0.6
3,912,583	-		CCNA_03743	0.22	-0.4
3,912,601	+		CCNA_03743	0.24	-0.4
3,912,601	+		CCNA_03743	0.24	+1.3
3,912,609	-		CCNA_03743	0.24	-0.6
3,912,609	-		CCNA_03743	0.24	+1.1
3,912,609	-		CCNA_03743	0.24	+0.8
3,912,609	-		CCNA_03743	0.24	-1.6
3,912,609	-		CCNA_03743	0.24	-1.0
3,912,610	+		CCNA_03743	0.24	+2.9
3,912,618	-		CCNA_03743	0.25	-0.9
3,912,661	+		CCNA_03743	0.28	-0.6
3,912,674	-		CCNA_03743	0.29	+2.4
3,912,674	-		CCNA_03743	0.29	-1.5
3,912,691	-		CCNA_03743	0.30	+0.1
3,912,725	+		CCNA_03743	0.32	+1.0
3,912,730	+		CCNA_03743	0.33	-2.3
3,912,738	-		CCNA_03743	0.33	+0.2
3,912,743	+		CCNA_03743	0.33	-2.6
3,912,760	+		CCNA_03743	0.35	-0.4
3,912,763	+		CCNA_03743	0.35	+0.5
3,912,768	-		CCNA_03743	0.35	-0.5
3,912,770	+		CCNA_03743	0.35	+2.6