Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1388

Experiment: BG11 with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with nitrite 5 mM
1,432,755	+				-0.2
1,432,772	-				-0.7
1,432,807	+				+0.4
1,432,813	-				-1.0
1,432,814	-				-1.4
1,432,823	+				+0.6
1,432,831	-				-1.0
1,432,838	-				-0.8
1,432,861	+				-0.7
1,432,869	-				-0.4
1,432,869	-				+0.9
1,433,515	+		Synpcc7942_1387	0.80	-2.1
1,433,684	+				+0.1
1,433,712	+				+0.2
1,433,733	+	ecaA	Synpcc7942_1388	0.10	+0.9
1,433,733	+	ecaA	Synpcc7942_1388	0.10	+1.7
1,433,733	+	ecaA	Synpcc7942_1388	0.10	+0.3
1,433,736	-	ecaA	Synpcc7942_1388	0.11	+0.2
1,433,738	+				+1.1
1,433,738	+	ecaA	Synpcc7942_1388	0.11	+0.3
1,433,741	-	ecaA	Synpcc7942_1388	0.11	-0.3
1,433,746	-	ecaA	Synpcc7942_1388	0.12	-2.9
1,433,746	-	ecaA	Synpcc7942_1388	0.12	-1.0
1,433,756	-	ecaA	Synpcc7942_1388	0.14	-0.7
1,433,768	+	ecaA	Synpcc7942_1388	0.15	+0.0
1,433,776	-	ecaA	Synpcc7942_1388	0.16	+0.8
1,433,786	+	ecaA	Synpcc7942_1388	0.18	+0.3
1,433,799	-	ecaA	Synpcc7942_1388	0.20	+0.1
1,433,827	-	ecaA	Synpcc7942_1388	0.24	-0.3
1,433,834	+	ecaA	Synpcc7942_1388	0.25	-0.5
1,433,857	+	ecaA	Synpcc7942_1388	0.28	-0.6
1,433,861	-	ecaA	Synpcc7942_1388	0.28	-0.4
1,433,861	-	ecaA	Synpcc7942_1388	0.28	+0.7
1,433,866	+	ecaA	Synpcc7942_1388	0.29	-2.6
1,433,879	-	ecaA	Synpcc7942_1388	0.31	-0.2
1,433,921	-	ecaA	Synpcc7942_1388	0.37	-0.4
1,433,936	+	ecaA	Synpcc7942_1388	0.39	+0.4
1,433,942	-	ecaA	Synpcc7942_1388	0.40	-0.2
1,433,944	-	ecaA	Synpcc7942_1388	0.40	+0.2
1,433,944	-	ecaA	Synpcc7942_1388	0.40	-0.8
1,434,000	-	ecaA	Synpcc7942_1388	0.48	-0.1
1,434,010	-	ecaA	Synpcc7942_1388	0.49	+0.1
1,434,010	-	ecaA	Synpcc7942_1388	0.49	-0.9
1,434,025	+	ecaA	Synpcc7942_1388	0.51	-0.1
1,434,100	-	ecaA	Synpcc7942_1388	0.62	-0.6
1,434,130	+	ecaA	Synpcc7942_1388	0.66	-0.1
1,434,137	+	ecaA	Synpcc7942_1388	0.67	+0.6
1,434,138	+	ecaA	Synpcc7942_1388	0.67	-0.5
1,434,138	+	ecaA	Synpcc7942_1388	0.67	-0.9
1,434,140	+	ecaA	Synpcc7942_1388	0.67	+0.2
1,434,145	-	ecaA	Synpcc7942_1388	0.68	-0.9
1,434,146	-	ecaA	Synpcc7942_1388	0.68	-0.2
1,434,146	-				-0.6
1,434,146	-	ecaA	Synpcc7942_1388	0.68	-0.3
1,434,146	-	ecaA	Synpcc7942_1388	0.68	-0.6
1,434,160	+	ecaA	Synpcc7942_1388	0.70	-1.6
1,434,193	-	ecaA	Synpcc7942_1388	0.75	+0.5
1,434,228	+	ecaA	Synpcc7942_1388	0.80	+0.5
1,434,228	+	ecaA	Synpcc7942_1388	0.80	+0.2
1,434,233	+	ecaA	Synpcc7942_1388	0.80	+0.1
1,434,241	-	ecaA	Synpcc7942_1388	0.82	-0.4
1,434,241	-	ecaA	Synpcc7942_1388	0.82	+0.1
1,434,255	+	ecaA	Synpcc7942_1388	0.83	-0.7
1,434,263	-	ecaA	Synpcc7942_1388	0.85	+1.2
1,434,263	-	ecaA	Synpcc7942_1388	0.85	-0.7
1,434,263	-	ecaA	Synpcc7942_1388	0.85	-0.6
1,434,268	-	ecaA	Synpcc7942_1388	0.85	+0.3
1,434,268	-				+1.1
1,434,268	-	ecaA	Synpcc7942_1388	0.85	+0.8
1,434,298	+	ecaA	Synpcc7942_1388	0.89	-0.3
1,434,298	+	ecaA	Synpcc7942_1388	0.89	-0.7
1,434,300	+	ecaA	Synpcc7942_1388	0.90	-0.3
1,434,308	-				+0.1
1,434,308	-				-0.3
1,434,350	-				+0.4
1,434,361	+				+0.0
1,434,367	+				+0.3
1,434,367	+				+1.0
1,434,367	+				-0.7
1,434,367	+				-0.5
1,434,367	+				-0.4
1,434,367	+				-1.1
1,434,367	+				-0.3
1,434,367	+				+0.9
1,434,367	+				+0.7
1,434,367	+				+0.1
1,434,375	-				+0.5
1,434,375	-				-0.7
1,434,375	-				-0.3
1,434,375	-				-0.3
1,434,375	-				+0.6
1,434,375	-				-0.1
1,434,375	-				+0.4
1,434,387	-				-0.3
1,434,402	+				-0.4
1,434,402	+				-0.3
1,434,410	-				-0.5
1,434,410	-				-0.2
1,434,410	-				-0.7
1,434,410	-				+0.3
1,434,410	-				-0.6
1,434,426	+				+0.3
1,434,469	+				-0.8
1,434,470	+				-1.0
1,434,477	-				+0.2
1,434,478	-				-0.8
1,434,478	-				-0.3
1,434,499	-				-0.1
1,434,560	+				-0.4