Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0582

Experiment: BG11 with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsI and Synpcc7942_0581 are separated by 96 nucleotidesSynpcc7942_0581 and Synpcc7942_0582 are separated by 38 nucleotidesSynpcc7942_0582 and chlI are separated by 98 nucleotides Synpcc7942_0580: ftsI - Peptidoglycan glycosyltransferase, at 560,720 to 562,537 ftsI Synpcc7942_0581: Synpcc7942_0581 - hypothetical protein, at 562,634 to 562,981 _0581 Synpcc7942_0582: Synpcc7942_0582 - hypothetical protein, at 563,020 to 564,024 _0582 Synpcc7942_0583: chlI - protoporphyrin IX magnesium-chelatase, at 564,123 to 565,217 chlI Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 562.535 kb on - strandat 562.541 kb on - strandat 562.554 kb on + strandat 562.554 kb on + strandat 562.562 kb on - strandat 562.562 kb on - strandat 562.569 kb on - strandat 562.604 kb on + strandat 562.612 kb on - strandat 562.626 kb on + strandat 562.665 kb on - strandat 562.687 kb on - strand, within Synpcc7942_0581at 562.687 kb on - strand, within Synpcc7942_0581at 562.703 kb on - strand, within Synpcc7942_0581at 562.711 kb on + strand, within Synpcc7942_0581at 562.717 kb on + strand, within Synpcc7942_0581at 562.719 kb on - strand, within Synpcc7942_0581at 562.725 kb on - strand, within Synpcc7942_0581at 562.725 kb on - strand, within Synpcc7942_0581at 562.733 kb on + strand, within Synpcc7942_0581at 562.733 kb on + strand, within Synpcc7942_0581at 562.772 kb on + strand, within Synpcc7942_0581at 562.772 kb on + strand, within Synpcc7942_0581at 562.818 kb on + strandat 562.826 kb on - strand, within Synpcc7942_0581at 562.826 kb on - strand, within Synpcc7942_0581at 562.826 kb on - strand, within Synpcc7942_0581at 562.833 kb on - strand, within Synpcc7942_0581at 562.843 kb on + strand, within Synpcc7942_0581at 562.843 kb on + strand, within Synpcc7942_0581at 562.843 kb on + strand, within Synpcc7942_0581at 562.848 kb on + strand, within Synpcc7942_0581at 562.851 kb on - strand, within Synpcc7942_0581at 562.851 kb on - strand, within Synpcc7942_0581at 562.856 kb on - strand, within Synpcc7942_0581at 562.869 kb on + strand, within Synpcc7942_0581at 562.904 kb on + strandat 562.904 kb on + strand, within Synpcc7942_0581at 562.910 kb on - strand, within Synpcc7942_0581at 562.968 kb on + strandat 562.984 kb on - strandat 563.002 kb on + strandat 563.018 kb on + strandat 563.021 kb on - strandat 563.023 kb on + strandat 563.031 kb on - strandat 563.036 kb on + strandat 563.076 kb on - strandat 563.097 kb on + strandat 563.137 kb on + strand, within Synpcc7942_0582at 563.137 kb on + strand, within Synpcc7942_0582at 563.155 kb on - strand, within Synpcc7942_0582at 563.180 kb on - strand, within Synpcc7942_0582at 563.180 kb on - strand, within Synpcc7942_0582at 563.224 kb on - strand, within Synpcc7942_0582at 563.226 kb on + strand, within Synpcc7942_0582at 563.226 kb on + strand, within Synpcc7942_0582at 563.226 kb on + strand, within Synpcc7942_0582at 563.231 kb on + strand, within Synpcc7942_0582at 563.234 kb on - strand, within Synpcc7942_0582at 563.234 kb on - strand, within Synpcc7942_0582at 563.249 kb on + strand, within Synpcc7942_0582at 563.275 kb on + strand, within Synpcc7942_0582at 563.296 kb on - strand, within Synpcc7942_0582at 563.301 kb on - strand, within Synpcc7942_0582at 563.315 kb on + strand, within Synpcc7942_0582at 563.323 kb on - strand, within Synpcc7942_0582at 563.332 kb on + strand, within Synpcc7942_0582at 563.342 kb on + strand, within Synpcc7942_0582at 563.342 kb on - strand, within Synpcc7942_0582at 563.350 kb on - strand, within Synpcc7942_0582at 563.374 kb on - strand, within Synpcc7942_0582at 563.375 kb on - strand, within Synpcc7942_0582at 563.408 kb on + strand, within Synpcc7942_0582at 563.436 kb on + strand, within Synpcc7942_0582at 563.454 kb on + strand, within Synpcc7942_0582at 563.462 kb on - strand, within Synpcc7942_0582at 563.462 kb on - strand, within Synpcc7942_0582at 563.467 kb on - strandat 563.506 kb on + strand, within Synpcc7942_0582at 563.541 kb on - strand, within Synpcc7942_0582at 563.541 kb on - strand, within Synpcc7942_0582at 563.544 kb on - strand, within Synpcc7942_0582at 563.544 kb on - strand, within Synpcc7942_0582at 563.546 kb on - strand, within Synpcc7942_0582at 563.555 kb on + strand, within Synpcc7942_0582at 563.558 kb on + strand, within Synpcc7942_0582at 563.605 kb on + strand, within Synpcc7942_0582at 563.675 kb on + strand, within Synpcc7942_0582at 563.678 kb on - strand, within Synpcc7942_0582at 563.678 kb on - strand, within Synpcc7942_0582at 563.688 kb on - strand, within Synpcc7942_0582at 563.703 kb on - strand, within Synpcc7942_0582at 563.724 kb on + strand, within Synpcc7942_0582at 563.747 kb on - strand, within Synpcc7942_0582at 563.749 kb on + strand, within Synpcc7942_0582at 563.763 kb on + strand, within Synpcc7942_0582at 563.763 kb on + strand, within Synpcc7942_0582at 563.771 kb on - strand, within Synpcc7942_0582at 563.773 kb on + strand, within Synpcc7942_0582at 563.773 kb on + strand, within Synpcc7942_0582at 563.773 kb on + strand, within Synpcc7942_0582at 563.773 kb on + strand, within Synpcc7942_0582at 563.781 kb on - strand, within Synpcc7942_0582at 563.781 kb on - strand, within Synpcc7942_0582at 563.781 kb on - strand, within Synpcc7942_0582at 563.853 kb on - strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.864 kb on + strand, within Synpcc7942_0582at 563.867 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.872 kb on - strand, within Synpcc7942_0582at 563.889 kb on + strand, within Synpcc7942_0582at 563.901 kb on + strand, within Synpcc7942_0582at 563.904 kb on - strand, within Synpcc7942_0582at 563.909 kb on - strand, within Synpcc7942_0582at 563.909 kb on - strand, within Synpcc7942_0582at 563.944 kb on + strandat 563.944 kb on + strandat 563.944 kb on + strandat 563.944 kb on + strandat 563.952 kb on - strandat 563.952 kb on - strandat 563.952 kb on - strandat 563.983 kb on - strandat 563.983 kb on - strandat 564.011 kb on + strandat 564.011 kb on + strandat 564.011 kb on + strandat 564.011 kb on + strandat 564.011 kb on + strandat 564.011 kb on + strandat 564.016 kb on - strandat 564.019 kb on - strandat 564.019 kb on - strandat 564.019 kb on - strandat 564.019 kb on - strandat 564.046 kb on + strandat 564.054 kb on + strandat 564.054 kb on + strandat 564.056 kb on + strandat 564.056 kb on + strandat 564.064 kb on - strandat 564.067 kb on + strandat 564.068 kb on + strandat 564.068 kb on + strandat 564.068 kb on + strandat 564.070 kb on + strandat 564.076 kb on - strandat 564.076 kb on - strandat 564.076 kb on - strandat 564.078 kb on - strandat 564.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with nitrite 5 mM
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562,535 - +0.4
562,541 - -1.1
562,554 + +0.5
562,554 + -0.6
562,562 - -0.5
562,562 - -1.0
562,569 - -0.6
562,604 + -0.8
562,612 - +0.7
562,626 + +0.5
562,665 - -0.1
562,687 - Synpcc7942_0581 0.15 -1.0
562,687 - Synpcc7942_0581 0.15 +0.4
562,703 - Synpcc7942_0581 0.20 +0.6
562,711 + Synpcc7942_0581 0.22 +0.4
562,717 + Synpcc7942_0581 0.24 -0.2
562,719 - Synpcc7942_0581 0.24 +0.8
562,725 - Synpcc7942_0581 0.26 -2.9
562,725 - Synpcc7942_0581 0.26 -0.9
562,733 + Synpcc7942_0581 0.28 -0.2
562,733 + Synpcc7942_0581 0.28 -0.5
562,772 + Synpcc7942_0581 0.40 -0.1
562,772 + Synpcc7942_0581 0.40 -0.5
562,818 + +0.8
562,826 - Synpcc7942_0581 0.55 -0.5
562,826 - Synpcc7942_0581 0.55 -1.1
562,826 - Synpcc7942_0581 0.55 +0.5
562,833 - Synpcc7942_0581 0.57 +0.2
562,843 + Synpcc7942_0581 0.60 +0.8
562,843 + Synpcc7942_0581 0.60 -0.3
562,843 + Synpcc7942_0581 0.60 -0.6
562,848 + Synpcc7942_0581 0.61 +0.5
562,851 - Synpcc7942_0581 0.62 +0.3
562,851 - Synpcc7942_0581 0.62 -0.7
562,856 - Synpcc7942_0581 0.64 -0.6
562,869 + Synpcc7942_0581 0.68 +0.4
562,904 + +1.8
562,904 + Synpcc7942_0581 0.78 -1.2
562,910 - Synpcc7942_0581 0.79 +0.7
562,968 + -0.7
562,984 - +1.4
563,002 + +0.2
563,018 + -0.3
563,021 - +0.3
563,023 + +0.9
563,031 - +0.0
563,036 + -0.1
563,076 - -0.0
563,097 + -0.6
563,137 + Synpcc7942_0582 0.12 +0.2
563,137 + Synpcc7942_0582 0.12 +0.2
563,155 - Synpcc7942_0582 0.13 -1.4
563,180 - Synpcc7942_0582 0.16 -1.0
563,180 - Synpcc7942_0582 0.16 -0.1
563,224 - Synpcc7942_0582 0.20 -1.0
563,226 + Synpcc7942_0582 0.20 -0.4
563,226 + Synpcc7942_0582 0.20 -0.2
563,226 + Synpcc7942_0582 0.20 -0.3
563,231 + Synpcc7942_0582 0.21 +0.4
563,234 - Synpcc7942_0582 0.21 -0.6
563,234 - Synpcc7942_0582 0.21 -0.4
563,249 + Synpcc7942_0582 0.23 +0.1
563,275 + Synpcc7942_0582 0.25 +0.3
563,296 - Synpcc7942_0582 0.27 -1.4
563,301 - Synpcc7942_0582 0.28 -0.1
563,315 + Synpcc7942_0582 0.29 -1.3
563,323 - Synpcc7942_0582 0.30 -0.2
563,332 + Synpcc7942_0582 0.31 -2.2
563,342 + Synpcc7942_0582 0.32 -1.2
563,342 - Synpcc7942_0582 0.32 -1.9
563,350 - Synpcc7942_0582 0.33 -2.8
563,374 - Synpcc7942_0582 0.35 -1.3
563,375 - Synpcc7942_0582 0.35 -0.5
563,408 + Synpcc7942_0582 0.39 +0.2
563,436 + Synpcc7942_0582 0.41 -1.1
563,454 + Synpcc7942_0582 0.43 +0.1
563,462 - Synpcc7942_0582 0.44 -1.3
563,462 - Synpcc7942_0582 0.44 +0.0
563,467 - -0.4
563,506 + Synpcc7942_0582 0.48 -2.2
563,541 - Synpcc7942_0582 0.52 +0.9
563,541 - Synpcc7942_0582 0.52 -0.5
563,544 - Synpcc7942_0582 0.52 -1.1
563,544 - Synpcc7942_0582 0.52 -2.8
563,546 - Synpcc7942_0582 0.52 -0.4
563,555 + Synpcc7942_0582 0.53 -0.0
563,558 + Synpcc7942_0582 0.54 +0.4
563,605 + Synpcc7942_0582 0.58 -0.5
563,675 + Synpcc7942_0582 0.65 +1.2
563,678 - Synpcc7942_0582 0.65 +0.6
563,678 - Synpcc7942_0582 0.65 -2.4
563,688 - Synpcc7942_0582 0.66 +0.1
563,703 - Synpcc7942_0582 0.68 -0.3
563,724 + Synpcc7942_0582 0.70 -2.8
563,747 - Synpcc7942_0582 0.72 -0.6
563,749 + Synpcc7942_0582 0.73 -0.8
563,763 + Synpcc7942_0582 0.74 +0.1
563,763 + Synpcc7942_0582 0.74 -1.0
563,771 - Synpcc7942_0582 0.75 -0.8
563,773 + Synpcc7942_0582 0.75 +0.4
563,773 + Synpcc7942_0582 0.75 +0.4
563,773 + Synpcc7942_0582 0.75 -0.1
563,773 + Synpcc7942_0582 0.75 -0.2
563,781 - Synpcc7942_0582 0.76 +0.4
563,781 - Synpcc7942_0582 0.76 +0.3
563,781 - Synpcc7942_0582 0.76 +0.5
563,853 - Synpcc7942_0582 0.83 -0.2
563,864 + Synpcc7942_0582 0.84 -0.5
563,864 + Synpcc7942_0582 0.84 -0.1
563,864 + Synpcc7942_0582 0.84 +0.6
563,864 + Synpcc7942_0582 0.84 -0.3
563,864 + Synpcc7942_0582 0.84 -0.6
563,864 + Synpcc7942_0582 0.84 +0.3
563,864 + Synpcc7942_0582 0.84 -0.8
563,864 + Synpcc7942_0582 0.84 -1.4
563,864 + Synpcc7942_0582 0.84 -1.5
563,864 + Synpcc7942_0582 0.84 -1.8
563,867 - Synpcc7942_0582 0.84 +0.8
563,872 - Synpcc7942_0582 0.85 -0.3
563,872 - Synpcc7942_0582 0.85 +0.8
563,872 - Synpcc7942_0582 0.85 -1.5
563,872 - Synpcc7942_0582 0.85 -0.8
563,872 - Synpcc7942_0582 0.85 -1.8
563,872 - Synpcc7942_0582 0.85 +0.1
563,872 - Synpcc7942_0582 0.85 -0.5
563,872 - Synpcc7942_0582 0.85 -0.4
563,872 - Synpcc7942_0582 0.85 +0.1
563,872 - Synpcc7942_0582 0.85 -1.1
563,872 - Synpcc7942_0582 0.85 -0.6
563,872 - Synpcc7942_0582 0.85 -1.0
563,889 + Synpcc7942_0582 0.86 -1.3
563,901 + Synpcc7942_0582 0.88 +0.6
563,904 - Synpcc7942_0582 0.88 +1.2
563,909 - Synpcc7942_0582 0.88 -0.1
563,909 - Synpcc7942_0582 0.88 -1.7
563,944 + +0.3
563,944 + +0.4
563,944 + -0.1
563,944 + +0.2
563,952 - +0.8
563,952 - +0.5
563,952 - +1.8
563,983 - -0.7
563,983 - -0.1
564,011 + +0.2
564,011 + -1.7
564,011 + -0.2
564,011 + +0.6
564,011 + +0.0
564,011 + -0.7
564,016 - +0.0
564,019 - +0.6
564,019 - -0.6
564,019 - -0.2
564,019 - +0.3
564,046 + +0.2
564,054 + -1.4
564,054 + -0.7
564,056 + +0.2
564,056 + -0.8
564,064 - -0.5
564,067 + -0.1
564,068 + -0.0
564,068 + -0.1
564,068 + +0.4
564,070 + -1.4
564,076 - -0.2
564,076 - -0.5
564,076 - -0.2
564,078 - +0.7
564,083 - +0.7

Or see this region's nucleotide sequence