Experiment: BG11 with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0482 and Synpcc7942_0483 are separated by 2 nucleotides Synpcc7942_0483 and Synpcc7942_0484 are separated by 212 nucleotides
Synpcc7942_0482: Synpcc7942_0482 - Peptidoglycan glycosyltransferase, at 467,004 to 468,773
_0482
Synpcc7942_0483: Synpcc7942_0483 - hypothetical protein, at 468,776 to 469,219
_0483
Synpcc7942_0484: Synpcc7942_0484 - hypothetical protein, at 469,432 to 470,874
_0484
Position (kb) 468
469
470 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 468.704 kb on + strand at 468.748 kb on + strand at 468.756 kb on - strand at 469.134 kb on + strand, within Synpcc7942_0483 at 469.161 kb on + strand, within Synpcc7942_0483 at 469.237 kb on + strand at 469.346 kb on + strand at 469.419 kb on + strand at 469.419 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.427 kb on - strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.430 kb on + strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.459 kb on + strand at 469.459 kb on + strand at 469.531 kb on - strand at 469.600 kb on + strand, within Synpcc7942_0484 at 469.657 kb on - strand, within Synpcc7942_0484 at 469.721 kb on + strand, within Synpcc7942_0484 at 469.807 kb on + strand, within Synpcc7942_0484 at 469.834 kb on + strand, within Synpcc7942_0484 at 469.883 kb on + strand, within Synpcc7942_0484 at 469.893 kb on + strand, within Synpcc7942_0484 at 470.144 kb on + strand, within Synpcc7942_0484 at 470.167 kb on - strand, within Synpcc7942_0484
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 5 mM remove 468,704 + -0.4 468,748 + -2.3 468,756 - -0.4 469,134 + Synpcc7942_0483 0.81 -1.3 469,161 + Synpcc7942_0483 0.87 -1.6 469,237 + -0.6 469,346 + -0.4 469,419 + -0.4 469,419 + -1.4 469,424 + -0.5 469,424 + +0.2 469,424 + +0.4 469,427 - +1.0 469,429 + +0.8 469,429 + -0.4 469,429 + -1.6 469,429 + -0.8 469,429 + -2.2 469,429 + -0.7 469,429 + -1.1 469,429 + -0.9 469,429 + +0.7 469,430 + +0.2 469,437 - -0.8 469,437 - -0.6 469,437 - +0.7 469,452 - -0.5 469,452 - -0.1 469,459 + -2.9 469,459 + +0.6 469,531 - -1.7 469,600 + Synpcc7942_0484 0.12 +0.8 469,657 - Synpcc7942_0484 0.16 -3.9 469,721 + Synpcc7942_0484 0.20 -2.2 469,807 + Synpcc7942_0484 0.26 -1.7 469,834 + Synpcc7942_0484 0.28 +0.1 469,883 + Synpcc7942_0484 0.31 -1.8 469,893 + Synpcc7942_0484 0.32 -2.3 470,144 + Synpcc7942_0484 0.49 -2.6 470,167 - Synpcc7942_0484 0.51 -1.5
Or see this region's nucleotide sequence