Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0452

Experiment: BG11 with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0451 and Synpcc7942_0452 are separated by 57 nucleotidesSynpcc7942_0452 and Synpcc7942_0453 are separated by 185 nucleotides Synpcc7942_0451: Synpcc7942_0451 - esterase, at 440,670 to 441,299 _0451 Synpcc7942_0452: Synpcc7942_0452 - hypothetical protein, at 441,357 to 441,836 _0452 Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236 _0453 Position (kb) 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1at 440.362 kb on - strandat 440.368 kb on - strandat 440.382 kb on + strandat 440.390 kb on + strandat 440.390 kb on - strandat 440.462 kb on + strandat 440.489 kb on - strandat 440.491 kb on + strandat 440.501 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.528 kb on + strandat 440.529 kb on - strandat 440.529 kb on - strandat 440.645 kb on + strandat 440.653 kb on + strandat 440.661 kb on - strandat 440.661 kb on - strandat 440.665 kb on + strandat 440.665 kb on + strandat 440.742 kb on - strand, within Synpcc7942_0451at 440.742 kb on - strand, within Synpcc7942_0451at 440.753 kb on + strand, within Synpcc7942_0451at 440.759 kb on + strand, within Synpcc7942_0451at 440.790 kb on + strand, within Synpcc7942_0451at 440.798 kb on + strand, within Synpcc7942_0451at 440.798 kb on - strand, within Synpcc7942_0451at 440.798 kb on - strand, within Synpcc7942_0451at 440.849 kb on + strand, within Synpcc7942_0451at 440.860 kb on + strandat 440.860 kb on + strand, within Synpcc7942_0451at 440.860 kb on + strand, within Synpcc7942_0451at 440.864 kb on + strand, within Synpcc7942_0451at 440.868 kb on - strand, within Synpcc7942_0451at 440.868 kb on - strand, within Synpcc7942_0451at 440.868 kb on - strand, within Synpcc7942_0451at 440.878 kb on + strand, within Synpcc7942_0451at 440.883 kb on + strand, within Synpcc7942_0451at 440.886 kb on - strand, within Synpcc7942_0451at 440.914 kb on - strand, within Synpcc7942_0451at 440.964 kb on + strand, within Synpcc7942_0451at 440.975 kb on - strand, within Synpcc7942_0451at 441.020 kb on - strand, within Synpcc7942_0451at 441.039 kb on - strand, within Synpcc7942_0451at 441.049 kb on - strand, within Synpcc7942_0451at 441.068 kb on + strand, within Synpcc7942_0451at 441.074 kb on + strand, within Synpcc7942_0451at 441.074 kb on + strand, within Synpcc7942_0451at 441.082 kb on - strand, within Synpcc7942_0451at 441.082 kb on - strand, within Synpcc7942_0451at 441.106 kb on + strand, within Synpcc7942_0451at 441.144 kb on + strand, within Synpcc7942_0451at 441.194 kb on + strand, within Synpcc7942_0451at 441.196 kb on + strand, within Synpcc7942_0451at 441.202 kb on - strand, within Synpcc7942_0451at 441.204 kb on - strand, within Synpcc7942_0451at 441.204 kb on - strand, within Synpcc7942_0451at 441.204 kb on - strand, within Synpcc7942_0451at 441.209 kb on - strand, within Synpcc7942_0451at 441.235 kb on + strand, within Synpcc7942_0451at 441.272 kb on + strandat 441.280 kb on - strandat 441.440 kb on + strand, within Synpcc7942_0452at 441.505 kb on + strand, within Synpcc7942_0452at 441.573 kb on - strand, within Synpcc7942_0452at 441.765 kb on + strand, within Synpcc7942_0452at 441.860 kb on + strandat 441.915 kb on + strandat 441.924 kb on + strandat 441.924 kb on + strandat 441.936 kb on + strandat 441.937 kb on + strandat 441.967 kb on - strandat 441.991 kb on - strandat 441.992 kb on + strandat 442.004 kb on + strandat 442.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with nitrite 5 mM
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440,362 - -0.3
440,368 - -0.8
440,382 + -0.3
440,390 + -0.3
440,390 - +0.3
440,462 + -0.7
440,489 - +0.4
440,491 + +0.3
440,501 + +0.6
440,521 + +1.4
440,521 + +0.3
440,521 + +0.4
440,528 + +0.1
440,529 - -0.7
440,529 - +0.9
440,645 + +0.5
440,653 + -1.1
440,661 - -2.9
440,661 - +0.2
440,665 + -0.3
440,665 + +1.2
440,742 - Synpcc7942_0451 0.11 -1.4
440,742 - Synpcc7942_0451 0.11 -2.6
440,753 + Synpcc7942_0451 0.13 -0.5
440,759 + Synpcc7942_0451 0.14 +0.8
440,790 + Synpcc7942_0451 0.19 -1.5
440,798 + Synpcc7942_0451 0.20 -0.2
440,798 - Synpcc7942_0451 0.20 +1.0
440,798 - Synpcc7942_0451 0.20 +0.4
440,849 + Synpcc7942_0451 0.28 -0.1
440,860 + +0.9
440,860 + Synpcc7942_0451 0.30 +0.0
440,860 + Synpcc7942_0451 0.30 -0.7
440,864 + Synpcc7942_0451 0.31 -1.6
440,868 - Synpcc7942_0451 0.31 -1.2
440,868 - Synpcc7942_0451 0.31 -1.2
440,868 - Synpcc7942_0451 0.31 +0.6
440,878 + Synpcc7942_0451 0.33 -0.4
440,883 + Synpcc7942_0451 0.34 -0.6
440,886 - Synpcc7942_0451 0.34 -0.6
440,914 - Synpcc7942_0451 0.39 -0.0
440,964 + Synpcc7942_0451 0.47 -0.1
440,975 - Synpcc7942_0451 0.48 -1.3
441,020 - Synpcc7942_0451 0.56 -2.9
441,039 - Synpcc7942_0451 0.59 +0.3
441,049 - Synpcc7942_0451 0.60 -0.9
441,068 + Synpcc7942_0451 0.63 -0.4
441,074 + Synpcc7942_0451 0.64 -0.5
441,074 + Synpcc7942_0451 0.64 +0.5
441,082 - Synpcc7942_0451 0.65 -0.2
441,082 - Synpcc7942_0451 0.65 -0.0
441,106 + Synpcc7942_0451 0.69 +0.3
441,144 + Synpcc7942_0451 0.75 +1.4
441,194 + Synpcc7942_0451 0.83 +0.9
441,196 + Synpcc7942_0451 0.83 -0.5
441,202 - Synpcc7942_0451 0.84 +1.3
441,204 - Synpcc7942_0451 0.85 -1.4
441,204 - Synpcc7942_0451 0.85 -0.2
441,204 - Synpcc7942_0451 0.85 -0.5
441,209 - Synpcc7942_0451 0.86 -0.6
441,235 + Synpcc7942_0451 0.90 -1.1
441,272 + -0.4
441,280 - +0.1
441,440 + Synpcc7942_0452 0.17 -0.2
441,505 + Synpcc7942_0452 0.31 -2.6
441,573 - Synpcc7942_0452 0.45 -1.8
441,765 + Synpcc7942_0452 0.85 -1.6
441,860 + -0.3
441,915 + -0.4
441,924 + +0.2
441,924 + +0.1
441,936 + -1.5
441,937 + +0.3
441,967 - -0.5
441,991 - -0.1
441,992 + +0.2
442,004 + -0.1
442,012 - +0.3

Or see this region's nucleotide sequence