Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6039

Experiment: Europium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6038 and Pf6N2E2_6039 are separated by 776 nucleotidesPf6N2E2_6039 and Pf6N2E2_6040 are separated by 98 nucleotidesPf6N2E2_6040 and Pf6N2E2_6041 are separated by 144 nucleotides Pf6N2E2_6038 - hypothetical protein, at 6,858,021 to 6,858,416 _6038 Pf6N2E2_6039 - Probable lipoprotein signal peptide, at 6,859,193 to 6,860,248 _6039 Pf6N2E2_6040 - hypothetical protein, at 6,860,347 to 6,861,024 _6040 Pf6N2E2_6041 - hypothetical protein, at 6,861,169 to 6,861,792 _6041 Position (kb) 6859 6860 6861Strain fitness (log2 ratio) -2 -1 0 1at 6858.412 kb on + strandat 6858.412 kb on + strandat 6858.413 kb on - strandat 6858.413 kb on - strandat 6858.413 kb on - strandat 6858.413 kb on - strandat 6858.413 kb on - strandat 6858.446 kb on + strandat 6858.447 kb on - strandat 6858.453 kb on + strandat 6858.453 kb on + strandat 6858.453 kb on + strandat 6858.453 kb on + strandat 6858.454 kb on - strandat 6858.457 kb on + strandat 6858.457 kb on + strandat 6858.457 kb on + strandat 6858.457 kb on + strandat 6858.458 kb on - strandat 6858.458 kb on - strandat 6858.458 kb on - strandat 6858.458 kb on - strandat 6858.458 kb on - strandat 6858.469 kb on + strandat 6858.469 kb on + strandat 6858.469 kb on + strandat 6858.470 kb on - strandat 6858.485 kb on + strandat 6858.486 kb on - strandat 6858.510 kb on + strandat 6858.510 kb on + strandat 6858.511 kb on - strandat 6858.721 kb on - strandat 6858.763 kb on + strandat 6858.959 kb on - strandat 6858.959 kb on - strandat 6858.968 kb on + strandat 6859.068 kb on + strandat 6859.068 kb on + strandat 6859.069 kb on - strandat 6859.069 kb on - strandat 6859.069 kb on - strandat 6859.098 kb on - strandat 6859.184 kb on + strandat 6859.184 kb on + strandat 6859.185 kb on - strandat 6859.185 kb on - strandat 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.357 kb on + strand, within Pf6N2E2_6039at 6859.358 kb on - strand, within Pf6N2E2_6039at 6859.650 kb on + strand, within Pf6N2E2_6039at 6859.859 kb on + strand, within Pf6N2E2_6039at 6859.860 kb on - strand, within Pf6N2E2_6039at 6859.860 kb on - strand, within Pf6N2E2_6039at 6859.929 kb on + strand, within Pf6N2E2_6039at 6859.929 kb on + strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6859.930 kb on - strand, within Pf6N2E2_6039at 6860.268 kb on - strandat 6860.298 kb on + strandat 6860.299 kb on - strandat 6860.348 kb on + strandat 6860.348 kb on + strandat 6860.348 kb on + strandat 6860.349 kb on - strandat 6860.456 kb on + strand, within Pf6N2E2_6040at 6860.456 kb on + strand, within Pf6N2E2_6040at 6860.457 kb on - strand, within Pf6N2E2_6040at 6860.457 kb on - strand, within Pf6N2E2_6040at 6860.564 kb on - strand, within Pf6N2E2_6040at 6860.661 kb on - strand, within Pf6N2E2_6040at 6860.818 kb on + strand, within Pf6N2E2_6040at 6860.827 kb on + strand, within Pf6N2E2_6040at 6861.055 kb on + strandat 6861.055 kb on + strandat 6861.055 kb on + strandat 6861.056 kb on - strandat 6861.063 kb on - strandat 6861.092 kb on - strandat 6861.132 kb on + strandat 6861.132 kb on + strandat 6861.133 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M
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6,858,412 + -0.6
6,858,412 + -0.2
6,858,413 - -0.1
6,858,413 - +1.4
6,858,413 - +1.0
6,858,413 - +0.1
6,858,413 - -1.4
6,858,446 + -0.9
6,858,447 - +0.3
6,858,453 + +0.3
6,858,453 + +0.4
6,858,453 + +0.3
6,858,453 + +0.3
6,858,454 - -0.3
6,858,457 + +0.6
6,858,457 + +1.3
6,858,457 + +0.3
6,858,457 + +0.2
6,858,458 - -0.9
6,858,458 - +0.6
6,858,458 - +0.2
6,858,458 - +0.1
6,858,458 - -0.6
6,858,469 + +0.9
6,858,469 + +0.6
6,858,469 + -0.6
6,858,470 - -0.4
6,858,485 + -1.6
6,858,486 - -0.4
6,858,510 + -0.3
6,858,510 + +1.0
6,858,511 - +0.6
6,858,721 - +0.4
6,858,763 + +1.0
6,858,959 - +0.4
6,858,959 - -0.1
6,858,968 + -0.3
6,859,068 + -0.0
6,859,068 + -0.4
6,859,069 - -0.1
6,859,069 - +0.4
6,859,069 - +0.0
6,859,098 - +0.6
6,859,184 + +0.1
6,859,184 + +0.4
6,859,185 - +0.3
6,859,185 - +0.6
6,859,357 + Pf6N2E2_6039 0.16 -0.9
6,859,357 + Pf6N2E2_6039 0.16 -0.1
6,859,357 + Pf6N2E2_6039 0.16 -0.4
6,859,357 + Pf6N2E2_6039 0.16 -1.3
6,859,358 - Pf6N2E2_6039 0.16 -0.3
6,859,650 + Pf6N2E2_6039 0.43 +0.1
6,859,859 + Pf6N2E2_6039 0.63 -0.3
6,859,860 - Pf6N2E2_6039 0.63 +0.1
6,859,860 - Pf6N2E2_6039 0.63 -1.3
6,859,929 + Pf6N2E2_6039 0.70 -0.3
6,859,929 + Pf6N2E2_6039 0.70 -1.5
6,859,930 - Pf6N2E2_6039 0.70 +0.2
6,859,930 - Pf6N2E2_6039 0.70 -1.6
6,859,930 - Pf6N2E2_6039 0.70 -1.0
6,859,930 - Pf6N2E2_6039 0.70 -0.2
6,859,930 - Pf6N2E2_6039 0.70 -1.2
6,860,268 - -0.2
6,860,298 + +0.2
6,860,299 - -0.8
6,860,348 + -0.2
6,860,348 + +0.1
6,860,348 + -0.1
6,860,349 - +0.8
6,860,456 + Pf6N2E2_6040 0.16 -0.1
6,860,456 + Pf6N2E2_6040 0.16 +0.3
6,860,457 - Pf6N2E2_6040 0.16 +0.8
6,860,457 - Pf6N2E2_6040 0.16 -0.7
6,860,564 - Pf6N2E2_6040 0.32 -0.0
6,860,661 - Pf6N2E2_6040 0.46 -2.0
6,860,818 + Pf6N2E2_6040 0.69 +0.3
6,860,827 + Pf6N2E2_6040 0.71 +0.0
6,861,055 + -0.3
6,861,055 + -0.3
6,861,055 + -0.4
6,861,056 - -0.1
6,861,063 - +1.0
6,861,092 - +0.3
6,861,132 + -0.7
6,861,132 + -0.6
6,861,133 - -0.1

Or see this region's nucleotide sequence