Experiment: Europium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6008 and Pf6N2E2_6009 are separated by 310 nucleotides Pf6N2E2_6009 and Pf6N2E2_6010 are separated by 89 nucleotides Pf6N2E2_6010 and Pf6N2E2_6011 are separated by 320 nucleotides
Pf6N2E2_6008 - Permease of the drug/metabolite transporter (DMT) superfamily, at 6,825,019 to 6,825,924
_6008
Pf6N2E2_6009 - hypothetical protein, at 6,826,235 to 6,826,447
_6009
Pf6N2E2_6010 - putative integrase, at 6,826,537 to 6,827,517
_6010
Pf6N2E2_6011 - Hyphotheical protein, at 6,827,838 to 6,829,241
_6011
Position (kb)
6826
6827
6828 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6825.613 kb on + strand, within Pf6N2E2_6008 at 6825.613 kb on + strand, within Pf6N2E2_6008 at 6825.613 kb on + strand, within Pf6N2E2_6008 at 6825.613 kb on + strand, within Pf6N2E2_6008 at 6825.614 kb on - strand, within Pf6N2E2_6008 at 6825.677 kb on + strand, within Pf6N2E2_6008 at 6825.677 kb on + strand, within Pf6N2E2_6008 at 6825.677 kb on + strand, within Pf6N2E2_6008 at 6825.677 kb on + strand, within Pf6N2E2_6008 at 6825.677 kb on + strand, within Pf6N2E2_6008 at 6825.678 kb on - strand, within Pf6N2E2_6008 at 6825.678 kb on - strand, within Pf6N2E2_6008 at 6825.678 kb on - strand, within Pf6N2E2_6008 at 6825.679 kb on + strand, within Pf6N2E2_6008 at 6825.679 kb on + strand, within Pf6N2E2_6008 at 6825.679 kb on + strand, within Pf6N2E2_6008 at 6825.679 kb on + strand, within Pf6N2E2_6008 at 6825.679 kb on + strand, within Pf6N2E2_6008 at 6825.679 kb on + strand at 6825.687 kb on - strand, within Pf6N2E2_6008 at 6825.687 kb on - strand, within Pf6N2E2_6008 at 6825.743 kb on + strand, within Pf6N2E2_6008 at 6825.768 kb on - strand, within Pf6N2E2_6008 at 6825.787 kb on + strand, within Pf6N2E2_6008 at 6825.787 kb on + strand, within Pf6N2E2_6008 at 6825.787 kb on + strand, within Pf6N2E2_6008 at 6825.855 kb on + strand at 6825.869 kb on - strand at 6825.869 kb on - strand at 6825.934 kb on + strand at 6825.934 kb on + strand at 6825.934 kb on + strand at 6825.935 kb on - strand at 6825.935 kb on - strand at 6825.935 kb on - strand at 6825.935 kb on - strand at 6825.935 kb on - strand at 6825.946 kb on - strand at 6825.955 kb on + strand at 6825.956 kb on - strand at 6825.956 kb on - strand at 6825.973 kb on + strand at 6825.974 kb on - strand at 6825.980 kb on + strand at 6825.980 kb on + strand at 6825.981 kb on - strand at 6825.986 kb on - strand at 6826.013 kb on - strand at 6826.023 kb on - strand at 6826.146 kb on + strand at 6826.147 kb on - strand at 6826.147 kb on - strand at 6826.148 kb on + strand at 6826.148 kb on + strand at 6826.149 kb on - strand at 6826.149 kb on - strand at 6826.149 kb on - strand at 6826.186 kb on + strand at 6826.186 kb on + strand at 6826.187 kb on - strand at 6826.187 kb on - strand at 6826.249 kb on + strand at 6826.249 kb on + strand at 6826.313 kb on + strand, within Pf6N2E2_6009 at 6826.313 kb on + strand, within Pf6N2E2_6009 at 6826.313 kb on + strand, within Pf6N2E2_6009 at 6826.313 kb on + strand, within Pf6N2E2_6009 at 6826.314 kb on - strand, within Pf6N2E2_6009 at 6826.314 kb on - strand, within Pf6N2E2_6009 at 6826.314 kb on - strand, within Pf6N2E2_6009 at 6826.326 kb on + strand, within Pf6N2E2_6009 at 6826.326 kb on + strand, within Pf6N2E2_6009 at 6826.327 kb on - strand, within Pf6N2E2_6009 at 6826.327 kb on - strand, within Pf6N2E2_6009 at 6826.327 kb on - strand, within Pf6N2E2_6009 at 6826.329 kb on + strand, within Pf6N2E2_6009 at 6826.329 kb on + strand, within Pf6N2E2_6009 at 6826.329 kb on + strand, within Pf6N2E2_6009 at 6826.329 kb on + strand, within Pf6N2E2_6009 at 6826.329 kb on + strand, within Pf6N2E2_6009 at 6826.330 kb on - strand, within Pf6N2E2_6009 at 6826.330 kb on - strand, within Pf6N2E2_6009 at 6826.330 kb on - strand, within Pf6N2E2_6009 at 6826.330 kb on - strand, within Pf6N2E2_6009 at 6826.330 kb on - strand, within Pf6N2E2_6009 at 6826.330 kb on - strand, within Pf6N2E2_6009 at 6826.332 kb on + strand, within Pf6N2E2_6009 at 6826.332 kb on + strand, within Pf6N2E2_6009 at 6826.333 kb on - strand, within Pf6N2E2_6009 at 6826.365 kb on + strand, within Pf6N2E2_6009 at 6826.365 kb on + strand, within Pf6N2E2_6009 at 6826.365 kb on + strand, within Pf6N2E2_6009 at 6826.366 kb on - strand, within Pf6N2E2_6009 at 6826.366 kb on - strand, within Pf6N2E2_6009 at 6826.366 kb on - strand, within Pf6N2E2_6009 at 6826.366 kb on - strand, within Pf6N2E2_6009 at 6826.369 kb on + strand, within Pf6N2E2_6009 at 6826.463 kb on + strand at 6826.499 kb on + strand at 6826.499 kb on + strand at 6826.500 kb on - strand at 6826.556 kb on + strand at 6826.557 kb on - strand at 6826.644 kb on - strand, within Pf6N2E2_6010 at 6826.706 kb on + strand, within Pf6N2E2_6010 at 6826.750 kb on + strand, within Pf6N2E2_6010 at 6826.751 kb on - strand, within Pf6N2E2_6010 at 6826.816 kb on + strand, within Pf6N2E2_6010 at 6826.817 kb on - strand, within Pf6N2E2_6010 at 6826.817 kb on - strand, within Pf6N2E2_6010 at 6826.845 kb on + strand, within Pf6N2E2_6010 at 6826.845 kb on + strand, within Pf6N2E2_6010 at 6826.845 kb on + strand, within Pf6N2E2_6010 at 6826.846 kb on - strand, within Pf6N2E2_6010 at 6827.016 kb on + strand, within Pf6N2E2_6010 at 6827.016 kb on + strand, within Pf6N2E2_6010 at 6827.016 kb on + strand, within Pf6N2E2_6010 at 6827.017 kb on - strand, within Pf6N2E2_6010 at 6827.017 kb on - strand, within Pf6N2E2_6010 at 6827.035 kb on + strand, within Pf6N2E2_6010 at 6827.035 kb on + strand, within Pf6N2E2_6010 at 6827.060 kb on + strand, within Pf6N2E2_6010 at 6827.086 kb on + strand, within Pf6N2E2_6010 at 6827.086 kb on + strand, within Pf6N2E2_6010 at 6827.087 kb on - strand, within Pf6N2E2_6010 at 6827.087 kb on - strand, within Pf6N2E2_6010 at 6827.134 kb on + strand, within Pf6N2E2_6010 at 6827.186 kb on + strand, within Pf6N2E2_6010 at 6827.186 kb on + strand, within Pf6N2E2_6010 at 6827.186 kb on + strand, within Pf6N2E2_6010 at 6827.186 kb on + strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.187 kb on - strand, within Pf6N2E2_6010 at 6827.288 kb on + strand, within Pf6N2E2_6010 at 6827.288 kb on + strand, within Pf6N2E2_6010 at 6827.297 kb on + strand, within Pf6N2E2_6010 at 6827.297 kb on + strand, within Pf6N2E2_6010 at 6827.297 kb on + strand, within Pf6N2E2_6010 at 6827.297 kb on + strand, within Pf6N2E2_6010 at 6827.298 kb on - strand, within Pf6N2E2_6010 at 6827.298 kb on - strand, within Pf6N2E2_6010 at 6827.298 kb on - strand, within Pf6N2E2_6010 at 6827.298 kb on - strand, within Pf6N2E2_6010 at 6827.339 kb on + strand, within Pf6N2E2_6010 at 6827.371 kb on + strand, within Pf6N2E2_6010 at 6827.372 kb on - strand, within Pf6N2E2_6010 at 6827.372 kb on - strand, within Pf6N2E2_6010 at 6827.372 kb on - strand at 6827.459 kb on + strand at 6827.477 kb on + strand at 6827.543 kb on + strand at 6827.544 kb on - strand at 6827.544 kb on - strand at 6827.547 kb on + strand at 6827.548 kb on - strand at 6827.548 kb on - strand at 6827.548 kb on - strand at 6827.556 kb on - strand at 6827.556 kb on - strand at 6827.556 kb on - strand at 6827.556 kb on - strand at 6827.556 kb on - strand at 6827.658 kb on - strand at 6827.658 kb on - strand at 6827.658 kb on - strand at 6827.740 kb on + strand at 6827.792 kb on + strand at 6827.831 kb on + strand at 6828.091 kb on + strand, within Pf6N2E2_6011 at 6828.091 kb on + strand, within Pf6N2E2_6011 at 6828.091 kb on + strand, within Pf6N2E2_6011 at 6828.095 kb on - strand, within Pf6N2E2_6011 at 6828.095 kb on - strand, within Pf6N2E2_6011 at 6828.095 kb on - strand, within Pf6N2E2_6011 at 6828.095 kb on - strand, within Pf6N2E2_6011 at 6828.095 kb on - strand, within Pf6N2E2_6011 at 6828.181 kb on - strand, within Pf6N2E2_6011 at 6828.258 kb on - strand, within Pf6N2E2_6011 at 6828.382 kb on + strand, within Pf6N2E2_6011
Per-strain Table
Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M remove 6,825,613 + Pf6N2E2_6008 0.66 +1.1 6,825,613 + Pf6N2E2_6008 0.66 +0.4 6,825,613 + Pf6N2E2_6008 0.66 +0.2 6,825,613 + Pf6N2E2_6008 0.66 -1.2 6,825,614 - Pf6N2E2_6008 0.66 +0.4 6,825,677 + Pf6N2E2_6008 0.73 +0.2 6,825,677 + Pf6N2E2_6008 0.73 -0.0 6,825,677 + Pf6N2E2_6008 0.73 +0.7 6,825,677 + Pf6N2E2_6008 0.73 -0.2 6,825,677 + Pf6N2E2_6008 0.73 +0.5 6,825,678 - Pf6N2E2_6008 0.73 +0.0 6,825,678 - Pf6N2E2_6008 0.73 +0.7 6,825,678 - Pf6N2E2_6008 0.73 +0.5 6,825,679 + Pf6N2E2_6008 0.73 -0.7 6,825,679 + Pf6N2E2_6008 0.73 -0.0 6,825,679 + Pf6N2E2_6008 0.73 -0.3 6,825,679 + Pf6N2E2_6008 0.73 +0.1 6,825,679 + Pf6N2E2_6008 0.73 -0.2 6,825,679 + +1.8 6,825,687 - Pf6N2E2_6008 0.74 +0.4 6,825,687 - Pf6N2E2_6008 0.74 +0.4 6,825,743 + Pf6N2E2_6008 0.80 +0.2 6,825,768 - Pf6N2E2_6008 0.83 -1.0 6,825,787 + Pf6N2E2_6008 0.85 -0.6 6,825,787 + Pf6N2E2_6008 0.85 +0.3 6,825,787 + Pf6N2E2_6008 0.85 -0.4 6,825,855 + +1.0 6,825,869 - -0.0 6,825,869 - -0.5 6,825,934 + +0.4 6,825,934 + +0.6 6,825,934 + -0.3 6,825,935 - -0.2 6,825,935 - +0.2 6,825,935 - +0.6 6,825,935 - +0.1 6,825,935 - +0.1 6,825,946 - +0.5 6,825,955 + -1.2 6,825,956 - -0.3 6,825,956 - -1.1 6,825,973 + +0.6 6,825,974 - -0.2 6,825,980 + +0.2 6,825,980 + -0.0 6,825,981 - -0.4 6,825,986 - +0.1 6,826,013 - +1.3 6,826,023 - -0.0 6,826,146 + +1.1 6,826,147 - -0.0 6,826,147 - +0.6 6,826,148 + +0.0 6,826,148 + +0.5 6,826,149 - +0.4 6,826,149 - -0.0 6,826,149 - +0.5 6,826,186 + -1.3 6,826,186 + -0.5 6,826,187 - -1.0 6,826,187 - +0.2 6,826,249 + +0.1 6,826,249 + -1.0 6,826,313 + Pf6N2E2_6009 0.37 -0.4 6,826,313 + Pf6N2E2_6009 0.37 -0.4 6,826,313 + Pf6N2E2_6009 0.37 -1.0 6,826,313 + Pf6N2E2_6009 0.37 -0.3 6,826,314 - Pf6N2E2_6009 0.37 -0.1 6,826,314 - Pf6N2E2_6009 0.37 +0.7 6,826,314 - Pf6N2E2_6009 0.37 +0.9 6,826,326 + Pf6N2E2_6009 0.43 +0.3 6,826,326 + Pf6N2E2_6009 0.43 +0.9 6,826,327 - Pf6N2E2_6009 0.43 -0.6 6,826,327 - Pf6N2E2_6009 0.43 +1.2 6,826,327 - Pf6N2E2_6009 0.43 -0.9 6,826,329 + Pf6N2E2_6009 0.44 +0.3 6,826,329 + Pf6N2E2_6009 0.44 +0.6 6,826,329 + Pf6N2E2_6009 0.44 +0.9 6,826,329 + Pf6N2E2_6009 0.44 -0.9 6,826,329 + Pf6N2E2_6009 0.44 -1.2 6,826,330 - Pf6N2E2_6009 0.45 +1.2 6,826,330 - Pf6N2E2_6009 0.45 -0.4 6,826,330 - Pf6N2E2_6009 0.45 +0.5 6,826,330 - Pf6N2E2_6009 0.45 -0.0 6,826,330 - Pf6N2E2_6009 0.45 +0.0 6,826,330 - Pf6N2E2_6009 0.45 +2.0 6,826,332 + Pf6N2E2_6009 0.46 +0.6 6,826,332 + Pf6N2E2_6009 0.46 +1.0 6,826,333 - Pf6N2E2_6009 0.46 +0.3 6,826,365 + Pf6N2E2_6009 0.61 +0.1 6,826,365 + Pf6N2E2_6009 0.61 +1.5 6,826,365 + Pf6N2E2_6009 0.61 -0.5 6,826,366 - Pf6N2E2_6009 0.62 +0.7 6,826,366 - Pf6N2E2_6009 0.62 +0.7 6,826,366 - Pf6N2E2_6009 0.62 +0.2 6,826,366 - Pf6N2E2_6009 0.62 +0.2 6,826,369 + Pf6N2E2_6009 0.63 -0.1 6,826,463 + -0.3 6,826,499 + +0.2 6,826,499 + -0.8 6,826,500 - -0.0 6,826,556 + +0.3 6,826,557 - +0.8 6,826,644 - Pf6N2E2_6010 0.11 -1.2 6,826,706 + Pf6N2E2_6010 0.17 -0.3 6,826,750 + Pf6N2E2_6010 0.22 +1.4 6,826,751 - Pf6N2E2_6010 0.22 +1.8 6,826,816 + Pf6N2E2_6010 0.28 +0.8 6,826,817 - Pf6N2E2_6010 0.29 +0.5 6,826,817 - Pf6N2E2_6010 0.29 -0.8 6,826,845 + Pf6N2E2_6010 0.31 +0.6 6,826,845 + Pf6N2E2_6010 0.31 +1.0 6,826,845 + Pf6N2E2_6010 0.31 +1.3 6,826,846 - Pf6N2E2_6010 0.31 +0.3 6,827,016 + Pf6N2E2_6010 0.49 +1.7 6,827,016 + Pf6N2E2_6010 0.49 +0.7 6,827,016 + Pf6N2E2_6010 0.49 +0.5 6,827,017 - Pf6N2E2_6010 0.49 +0.9 6,827,017 - Pf6N2E2_6010 0.49 +1.1 6,827,035 + Pf6N2E2_6010 0.51 -0.5 6,827,035 + Pf6N2E2_6010 0.51 +0.1 6,827,060 + Pf6N2E2_6010 0.53 +0.3 6,827,086 + Pf6N2E2_6010 0.56 +0.6 6,827,086 + Pf6N2E2_6010 0.56 +0.2 6,827,087 - Pf6N2E2_6010 0.56 -0.3 6,827,087 - Pf6N2E2_6010 0.56 -0.7 6,827,134 + Pf6N2E2_6010 0.61 +0.8 6,827,186 + Pf6N2E2_6010 0.66 +0.0 6,827,186 + Pf6N2E2_6010 0.66 +0.1 6,827,186 + Pf6N2E2_6010 0.66 -3.0 6,827,186 + Pf6N2E2_6010 0.66 -0.7 6,827,187 - Pf6N2E2_6010 0.66 +1.3 6,827,187 - Pf6N2E2_6010 0.66 +0.2 6,827,187 - Pf6N2E2_6010 0.66 +0.2 6,827,187 - Pf6N2E2_6010 0.66 +0.6 6,827,187 - Pf6N2E2_6010 0.66 +1.4 6,827,187 - Pf6N2E2_6010 0.66 -0.8 6,827,187 - Pf6N2E2_6010 0.66 +0.5 6,827,187 - Pf6N2E2_6010 0.66 +0.8 6,827,187 - Pf6N2E2_6010 0.66 -0.9 6,827,288 + Pf6N2E2_6010 0.77 +0.7 6,827,288 + Pf6N2E2_6010 0.77 +0.2 6,827,297 + Pf6N2E2_6010 0.77 +0.2 6,827,297 + Pf6N2E2_6010 0.77 +0.3 6,827,297 + Pf6N2E2_6010 0.77 -0.1 6,827,297 + Pf6N2E2_6010 0.77 -0.0 6,827,298 - Pf6N2E2_6010 0.78 +0.4 6,827,298 - Pf6N2E2_6010 0.78 -0.2 6,827,298 - Pf6N2E2_6010 0.78 +0.7 6,827,298 - Pf6N2E2_6010 0.78 +0.4 6,827,339 + Pf6N2E2_6010 0.82 -0.0 6,827,371 + Pf6N2E2_6010 0.85 -0.1 6,827,372 - Pf6N2E2_6010 0.85 +0.4 6,827,372 - Pf6N2E2_6010 0.85 +0.1 6,827,372 - +1.0 6,827,459 + -0.8 6,827,477 + +0.7 6,827,543 + +0.1 6,827,544 - -0.5 6,827,544 - -0.9 6,827,547 + +0.1 6,827,548 - -0.4 6,827,548 - +0.1 6,827,548 - -1.4 6,827,556 - +0.3 6,827,556 - +0.3 6,827,556 - -0.1 6,827,556 - -0.5 6,827,556 - -1.0 6,827,658 - -0.7 6,827,658 - -0.5 6,827,658 - -0.5 6,827,740 + +0.4 6,827,792 + -0.8 6,827,831 + +0.4 6,828,091 + Pf6N2E2_6011 0.18 +0.1 6,828,091 + Pf6N2E2_6011 0.18 -0.2 6,828,091 + Pf6N2E2_6011 0.18 +0.1 6,828,095 - Pf6N2E2_6011 0.18 +2.8 6,828,095 - Pf6N2E2_6011 0.18 -0.1 6,828,095 - Pf6N2E2_6011 0.18 -1.7 6,828,095 - Pf6N2E2_6011 0.18 +0.6 6,828,095 - Pf6N2E2_6011 0.18 +0.2 6,828,181 - Pf6N2E2_6011 0.24 -0.2 6,828,258 - Pf6N2E2_6011 0.30 +0.2 6,828,382 + Pf6N2E2_6011 0.39 +0.6
Or see this region's nucleotide sequence