Experiment: Europium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4676 and Pf6N2E2_4677 are separated by 295 nucleotides Pf6N2E2_4677 and Pf6N2E2_4678 overlap by 9 nucleotides Pf6N2E2_4678 and Pf6N2E2_4679 overlap by 19 nucleotides
Pf6N2E2_4676 - TldD family protein, Beta/Gamma-proteobacterial subgroup, at 5,408,559 to 5,410,001
_4676
Pf6N2E2_4677 - Choline dehydrogenase (EC 1.1.99.1), at 5,410,297 to 5,412,000
_4677
Pf6N2E2_4678 - hypothetical protein, at 5,411,992 to 5,412,231
_4678
Pf6N2E2_4679 - Betaine aldehyde dehydrogenase (EC 1.2.1.8), at 5,412,213 to 5,413,685
_4679
Position (kb)
5410
5411
5412
5413 Strain fitness (log2 ratio)
-1
0
1
2 at 5409.485 kb on - strand, within Pf6N2E2_4676 at 5409.532 kb on + strand, within Pf6N2E2_4676 at 5409.533 kb on - strand, within Pf6N2E2_4676 at 5409.629 kb on - strand, within Pf6N2E2_4676 at 5409.629 kb on - strand, within Pf6N2E2_4676 at 5409.676 kb on + strand, within Pf6N2E2_4676 at 5409.677 kb on - strand, within Pf6N2E2_4676 at 5409.812 kb on - strand, within Pf6N2E2_4676 at 5409.812 kb on - strand, within Pf6N2E2_4676 at 5409.812 kb on - strand, within Pf6N2E2_4676 at 5409.926 kb on - strand at 5410.061 kb on + strand at 5410.061 kb on + strand at 5410.062 kb on - strand at 5410.066 kb on + strand at 5410.066 kb on + strand at 5410.094 kb on + strand at 5410.094 kb on + strand at 5410.094 kb on + strand at 5410.094 kb on + strand at 5410.094 kb on + strand at 5410.094 kb on + strand at 5410.094 kb on + strand at 5410.361 kb on + strand at 5410.361 kb on + strand at 5410.361 kb on + strand at 5410.361 kb on + strand at 5410.361 kb on + strand at 5410.362 kb on - strand at 5410.362 kb on - strand at 5410.362 kb on - strand at 5410.362 kb on - strand at 5410.362 kb on - strand at 5410.364 kb on + strand at 5410.365 kb on - strand at 5410.754 kb on + strand, within Pf6N2E2_4677 at 5410.754 kb on + strand, within Pf6N2E2_4677 at 5410.754 kb on + strand, within Pf6N2E2_4677 at 5410.754 kb on + strand, within Pf6N2E2_4677 at 5410.755 kb on - strand, within Pf6N2E2_4677 at 5410.755 kb on - strand, within Pf6N2E2_4677 at 5410.755 kb on - strand, within Pf6N2E2_4677 at 5410.883 kb on + strand, within Pf6N2E2_4677 at 5410.883 kb on + strand, within Pf6N2E2_4677 at 5410.883 kb on + strand, within Pf6N2E2_4677 at 5410.883 kb on + strand, within Pf6N2E2_4677 at 5410.883 kb on + strand, within Pf6N2E2_4677 at 5410.883 kb on + strand, within Pf6N2E2_4677 at 5410.884 kb on - strand, within Pf6N2E2_4677 at 5410.884 kb on - strand, within Pf6N2E2_4677 at 5410.884 kb on - strand, within Pf6N2E2_4677 at 5410.884 kb on - strand, within Pf6N2E2_4677 at 5410.888 kb on - strand, within Pf6N2E2_4677 at 5411.033 kb on + strand, within Pf6N2E2_4677 at 5411.052 kb on - strand, within Pf6N2E2_4677 at 5411.078 kb on + strand, within Pf6N2E2_4677 at 5411.078 kb on + strand, within Pf6N2E2_4677 at 5411.079 kb on - strand, within Pf6N2E2_4677 at 5411.079 kb on - strand, within Pf6N2E2_4677 at 5411.079 kb on - strand, within Pf6N2E2_4677 at 5411.087 kb on + strand, within Pf6N2E2_4677 at 5411.087 kb on + strand, within Pf6N2E2_4677 at 5411.087 kb on + strand, within Pf6N2E2_4677 at 5411.087 kb on + strand, within Pf6N2E2_4677 at 5411.088 kb on - strand, within Pf6N2E2_4677 at 5411.088 kb on - strand, within Pf6N2E2_4677 at 5411.384 kb on + strand, within Pf6N2E2_4677 at 5411.385 kb on - strand, within Pf6N2E2_4677 at 5411.497 kb on + strand, within Pf6N2E2_4677 at 5411.498 kb on - strand, within Pf6N2E2_4677 at 5411.625 kb on - strand, within Pf6N2E2_4677 at 5411.625 kb on - strand, within Pf6N2E2_4677 at 5411.642 kb on + strand, within Pf6N2E2_4677 at 5411.642 kb on + strand, within Pf6N2E2_4677 at 5411.643 kb on - strand, within Pf6N2E2_4677 at 5411.643 kb on - strand, within Pf6N2E2_4677 at 5411.643 kb on - strand, within Pf6N2E2_4677 at 5411.684 kb on + strand, within Pf6N2E2_4677 at 5411.685 kb on - strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.708 kb on + strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.709 kb on - strand, within Pf6N2E2_4677 at 5411.805 kb on - strand, within Pf6N2E2_4677 at 5411.981 kb on + strand at 5411.981 kb on + strand at 5411.982 kb on - strand at 5411.989 kb on + strand at 5411.989 kb on + strand at 5411.990 kb on - strand at 5412.099 kb on - strand, within Pf6N2E2_4678 at 5412.249 kb on + strand at 5412.319 kb on + strand at 5412.375 kb on - strand, within Pf6N2E2_4679 at 5412.493 kb on + strand, within Pf6N2E2_4679 at 5412.494 kb on - strand, within Pf6N2E2_4679 at 5412.668 kb on - strand, within Pf6N2E2_4679 at 5412.668 kb on - strand, within Pf6N2E2_4679 at 5412.668 kb on - strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.847 kb on + strand, within Pf6N2E2_4679 at 5412.848 kb on - strand, within Pf6N2E2_4679 at 5412.848 kb on - strand, within Pf6N2E2_4679
Per-strain Table
Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M remove 5,409,485 - Pf6N2E2_4676 0.64 +0.3 5,409,532 + Pf6N2E2_4676 0.67 -0.2 5,409,533 - Pf6N2E2_4676 0.67 +0.1 5,409,629 - Pf6N2E2_4676 0.74 -0.1 5,409,629 - Pf6N2E2_4676 0.74 +0.6 5,409,676 + Pf6N2E2_4676 0.77 +1.0 5,409,677 - Pf6N2E2_4676 0.77 -0.8 5,409,812 - Pf6N2E2_4676 0.87 +0.3 5,409,812 - Pf6N2E2_4676 0.87 +0.1 5,409,812 - Pf6N2E2_4676 0.87 +0.2 5,409,926 - +0.4 5,410,061 + -0.8 5,410,061 + +0.7 5,410,062 - -0.0 5,410,066 + -0.9 5,410,066 + +1.3 5,410,094 + -0.2 5,410,094 + +1.3 5,410,094 + +0.9 5,410,094 + -0.3 5,410,094 + -0.4 5,410,094 + -0.4 5,410,094 + -0.1 5,410,361 + +0.2 5,410,361 + -0.3 5,410,361 + +0.4 5,410,361 + -0.2 5,410,361 + -0.7 5,410,362 - +2.0 5,410,362 - +0.5 5,410,362 - +1.2 5,410,362 - -0.0 5,410,362 - +0.1 5,410,364 + +0.1 5,410,365 - +0.5 5,410,754 + Pf6N2E2_4677 0.27 -0.2 5,410,754 + Pf6N2E2_4677 0.27 +2.4 5,410,754 + Pf6N2E2_4677 0.27 -0.5 5,410,754 + Pf6N2E2_4677 0.27 +1.8 5,410,755 - Pf6N2E2_4677 0.27 +1.4 5,410,755 - Pf6N2E2_4677 0.27 -0.2 5,410,755 - Pf6N2E2_4677 0.27 +0.4 5,410,883 + Pf6N2E2_4677 0.34 -0.3 5,410,883 + Pf6N2E2_4677 0.34 +0.0 5,410,883 + Pf6N2E2_4677 0.34 +0.1 5,410,883 + Pf6N2E2_4677 0.34 -0.7 5,410,883 + Pf6N2E2_4677 0.34 +0.0 5,410,883 + Pf6N2E2_4677 0.34 +0.2 5,410,884 - Pf6N2E2_4677 0.34 -0.5 5,410,884 - Pf6N2E2_4677 0.34 +0.3 5,410,884 - Pf6N2E2_4677 0.34 -0.1 5,410,884 - Pf6N2E2_4677 0.34 -0.1 5,410,888 - Pf6N2E2_4677 0.35 -0.2 5,411,033 + Pf6N2E2_4677 0.43 -1.7 5,411,052 - Pf6N2E2_4677 0.44 -0.0 5,411,078 + Pf6N2E2_4677 0.46 +0.7 5,411,078 + Pf6N2E2_4677 0.46 -0.9 5,411,079 - Pf6N2E2_4677 0.46 +0.1 5,411,079 - Pf6N2E2_4677 0.46 -0.8 5,411,079 - Pf6N2E2_4677 0.46 -0.0 5,411,087 + Pf6N2E2_4677 0.46 +0.0 5,411,087 + Pf6N2E2_4677 0.46 +1.0 5,411,087 + Pf6N2E2_4677 0.46 -0.6 5,411,087 + Pf6N2E2_4677 0.46 +0.4 5,411,088 - Pf6N2E2_4677 0.46 +0.6 5,411,088 - Pf6N2E2_4677 0.46 +0.1 5,411,384 + Pf6N2E2_4677 0.64 -0.1 5,411,385 - Pf6N2E2_4677 0.64 -0.5 5,411,497 + Pf6N2E2_4677 0.70 +0.6 5,411,498 - Pf6N2E2_4677 0.70 -0.9 5,411,625 - Pf6N2E2_4677 0.78 +0.4 5,411,625 - Pf6N2E2_4677 0.78 -0.2 5,411,642 + Pf6N2E2_4677 0.79 +1.6 5,411,642 + Pf6N2E2_4677 0.79 -0.9 5,411,643 - Pf6N2E2_4677 0.79 +0.5 5,411,643 - Pf6N2E2_4677 0.79 -0.7 5,411,643 - Pf6N2E2_4677 0.79 +0.1 5,411,684 + Pf6N2E2_4677 0.81 +0.2 5,411,685 - Pf6N2E2_4677 0.81 +0.2 5,411,708 + Pf6N2E2_4677 0.83 -0.1 5,411,708 + Pf6N2E2_4677 0.83 +0.1 5,411,708 + Pf6N2E2_4677 0.83 -0.1 5,411,708 + Pf6N2E2_4677 0.83 -0.5 5,411,708 + Pf6N2E2_4677 0.83 -0.5 5,411,708 + Pf6N2E2_4677 0.83 +0.1 5,411,708 + Pf6N2E2_4677 0.83 -0.6 5,411,708 + Pf6N2E2_4677 0.83 -0.1 5,411,709 - Pf6N2E2_4677 0.83 -0.1 5,411,709 - Pf6N2E2_4677 0.83 +0.2 5,411,709 - Pf6N2E2_4677 0.83 -0.4 5,411,709 - Pf6N2E2_4677 0.83 -0.3 5,411,709 - Pf6N2E2_4677 0.83 -0.3 5,411,805 - Pf6N2E2_4677 0.88 +0.3 5,411,981 + +0.1 5,411,981 + -0.4 5,411,982 - +0.6 5,411,989 + +0.4 5,411,989 + +1.2 5,411,990 - +1.2 5,412,099 - Pf6N2E2_4678 0.45 +0.6 5,412,249 + +0.1 5,412,319 + -0.2 5,412,375 - Pf6N2E2_4679 0.11 +0.2 5,412,493 + Pf6N2E2_4679 0.19 -0.3 5,412,494 - Pf6N2E2_4679 0.19 -0.7 5,412,668 - Pf6N2E2_4679 0.31 +0.3 5,412,668 - Pf6N2E2_4679 0.31 +0.0 5,412,668 - Pf6N2E2_4679 0.31 +0.3 5,412,847 + Pf6N2E2_4679 0.43 +0.5 5,412,847 + Pf6N2E2_4679 0.43 -1.2 5,412,847 + Pf6N2E2_4679 0.43 +0.1 5,412,848 - Pf6N2E2_4679 0.43 +0.2 5,412,848 - Pf6N2E2_4679 0.43 -1.1
Or see this region's nucleotide sequence