Experiment: Europium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2788 and Pf6N2E2_2789 are separated by 145 nucleotides Pf6N2E2_2789 and Pf6N2E2_2790 are separated by 221 nucleotides Pf6N2E2_2790 and Pf6N2E2_2791 are separated by 269 nucleotides Pf6N2E2_2791 and Pf6N2E2_2792 overlap by 41 nucleotides
Pf6N2E2_2788 - Transcriptional regulator, AsnC family, at 3,278,476 to 3,278,958
_2788
Pf6N2E2_2789 - L-lysine permease, at 3,279,104 to 3,279,733
_2789
Pf6N2E2_2790 - Helix-turn-helix motif, at 3,279,955 to 3,280,317
_2790
Pf6N2E2_2791 - FIG00954883: hypothetical protein, at 3,280,587 to 3,280,838
_2791
Pf6N2E2_2792 - Antitoxin 1, at 3,280,798 to 3,281,214
_2792
Position (kb)
3279
3280
3281 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3279.063 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.146 kb on + strand at 3279.147 kb on - strand at 3279.147 kb on - strand at 3279.147 kb on - strand at 3279.147 kb on - strand at 3279.147 kb on - strand at 3279.147 kb on - strand at 3279.147 kb on - strand at 3279.147 kb on - strand at 3279.341 kb on + strand, within Pf6N2E2_2789 at 3279.432 kb on - strand, within Pf6N2E2_2789 at 3279.501 kb on + strand, within Pf6N2E2_2789 at 3279.502 kb on - strand, within Pf6N2E2_2789 at 3279.602 kb on + strand, within Pf6N2E2_2789 at 3279.603 kb on - strand, within Pf6N2E2_2789 at 3279.613 kb on - strand, within Pf6N2E2_2789 at 3279.613 kb on - strand, within Pf6N2E2_2789 at 3279.732 kb on - strand at 3279.732 kb on - strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.800 kb on - strand at 3279.800 kb on - strand at 3279.803 kb on + strand at 3279.840 kb on + strand at 3279.881 kb on + strand at 3279.930 kb on - strand at 3279.955 kb on - strand at 3279.955 kb on - strand at 3280.105 kb on + strand, within Pf6N2E2_2790 at 3280.257 kb on + strand, within Pf6N2E2_2790 at 3280.258 kb on - strand, within Pf6N2E2_2790 at 3280.288 kb on + strand at 3280.288 kb on + strand at 3280.356 kb on + strand at 3280.356 kb on + strand at 3280.357 kb on - strand at 3280.357 kb on - strand at 3280.397 kb on + strand at 3280.429 kb on - strand at 3280.472 kb on + strand at 3280.472 kb on + strand at 3280.526 kb on - strand at 3280.526 kb on - strand at 3280.552 kb on + strand at 3280.554 kb on + strand at 3280.607 kb on - strand at 3280.607 kb on - strand at 3280.607 kb on - strand at 3280.632 kb on + strand, within Pf6N2E2_2791 at 3280.633 kb on - strand, within Pf6N2E2_2791 at 3280.633 kb on - strand, within Pf6N2E2_2791 at 3280.742 kb on + strand, within Pf6N2E2_2791 at 3281.065 kb on + strand, within Pf6N2E2_2792 at 3281.107 kb on + strand, within Pf6N2E2_2792 at 3281.107 kb on + strand, within Pf6N2E2_2792 at 3281.107 kb on + strand, within Pf6N2E2_2792 at 3281.131 kb on + strand, within Pf6N2E2_2792 at 3281.131 kb on + strand, within Pf6N2E2_2792 at 3281.131 kb on + strand, within Pf6N2E2_2792
Per-strain Table
Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M remove 3,279,063 + +0.3 3,279,146 + +0.2 3,279,146 + +1.0 3,279,146 + -1.3 3,279,146 + +0.0 3,279,146 + -0.9 3,279,146 + +0.8 3,279,146 + -0.4 3,279,146 + +0.6 3,279,146 + +0.2 3,279,146 + -0.1 3,279,146 + -0.4 3,279,146 + +0.1 3,279,146 + -0.3 3,279,146 + -0.9 3,279,147 - +0.3 3,279,147 - +0.1 3,279,147 - +0.7 3,279,147 - -0.2 3,279,147 - +0.1 3,279,147 - -0.8 3,279,147 - +1.1 3,279,147 - -0.7 3,279,341 + Pf6N2E2_2789 0.38 -0.0 3,279,432 - Pf6N2E2_2789 0.52 -0.7 3,279,501 + Pf6N2E2_2789 0.63 +0.1 3,279,502 - Pf6N2E2_2789 0.63 -0.4 3,279,602 + Pf6N2E2_2789 0.79 -0.0 3,279,603 - Pf6N2E2_2789 0.79 -0.4 3,279,613 - Pf6N2E2_2789 0.81 +0.1 3,279,613 - Pf6N2E2_2789 0.81 +0.6 3,279,732 - -0.3 3,279,732 - -0.1 3,279,799 + +0.7 3,279,799 + -0.1 3,279,799 + +0.2 3,279,799 + +0.1 3,279,799 + +1.2 3,279,799 + +0.2 3,279,800 - -0.2 3,279,800 - +0.3 3,279,803 + -1.7 3,279,840 + +0.6 3,279,881 + -0.4 3,279,930 - +0.8 3,279,955 - -0.4 3,279,955 - +0.1 3,280,105 + Pf6N2E2_2790 0.41 -0.5 3,280,257 + Pf6N2E2_2790 0.83 -0.2 3,280,258 - Pf6N2E2_2790 0.83 -0.3 3,280,288 + -0.1 3,280,288 + +0.4 3,280,356 + +0.8 3,280,356 + +1.4 3,280,357 - -1.0 3,280,357 - +0.3 3,280,397 + +0.5 3,280,429 - -0.7 3,280,472 + -0.3 3,280,472 + +1.0 3,280,526 - +0.4 3,280,526 - -0.1 3,280,552 + +0.2 3,280,554 + +0.7 3,280,607 - -0.2 3,280,607 - +0.3 3,280,607 - +1.9 3,280,632 + Pf6N2E2_2791 0.18 -1.1 3,280,633 - Pf6N2E2_2791 0.18 -0.4 3,280,633 - Pf6N2E2_2791 0.18 +0.6 3,280,742 + Pf6N2E2_2791 0.62 +0.6 3,281,065 + Pf6N2E2_2792 0.64 +0.3 3,281,107 + Pf6N2E2_2792 0.74 +0.0 3,281,107 + Pf6N2E2_2792 0.74 +0.1 3,281,107 + Pf6N2E2_2792 0.74 -2.1 3,281,131 + Pf6N2E2_2792 0.80 -0.4 3,281,131 + Pf6N2E2_2792 0.80 -0.7 3,281,131 + Pf6N2E2_2792 0.80 -0.4
Or see this region's nucleotide sequence