Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2114

Experiment: Europium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2113 and Pf6N2E2_2114 are separated by 688 nucleotidesPf6N2E2_2114 and Pf6N2E2_2115 are separated by 244 nucleotides Pf6N2E2_2113 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 2,509,522 to 2,510,703 _2113 Pf6N2E2_2114 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 2,511,392 to 2,512,102 _2114 Pf6N2E2_2115 - Major facilitator family transporter, at 2,512,347 to 2,513,789 _2115 Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -2 -1 0 1 2at 2511.387 kb on - strandat 2511.387 kb on - strandat 2511.702 kb on + strand, within Pf6N2E2_2114at 2511.947 kb on - strand, within Pf6N2E2_2114at 2511.947 kb on - strand, within Pf6N2E2_2114at 2512.138 kb on - strandat 2512.183 kb on - strandat 2512.265 kb on - strandat 2512.554 kb on + strand, within Pf6N2E2_2115at 2512.555 kb on - strand, within Pf6N2E2_2115at 2512.555 kb on - strand, within Pf6N2E2_2115at 2512.633 kb on + strand, within Pf6N2E2_2115at 2512.633 kb on + strand, within Pf6N2E2_2115at 2512.633 kb on + strand, within Pf6N2E2_2115at 2512.633 kb on + strand, within Pf6N2E2_2115at 2512.633 kb on + strand, within Pf6N2E2_2115at 2512.634 kb on - strand, within Pf6N2E2_2115at 2512.660 kb on - strand, within Pf6N2E2_2115at 2512.712 kb on + strand, within Pf6N2E2_2115at 2512.791 kb on + strand, within Pf6N2E2_2115at 2512.792 kb on - strand, within Pf6N2E2_2115at 2512.792 kb on - strand, within Pf6N2E2_2115at 2512.792 kb on - strand, within Pf6N2E2_2115at 2512.792 kb on - strand, within Pf6N2E2_2115at 2512.792 kb on - strand, within Pf6N2E2_2115at 2512.848 kb on + strand, within Pf6N2E2_2115at 2512.848 kb on + strand, within Pf6N2E2_2115at 2512.848 kb on + strand, within Pf6N2E2_2115at 2512.849 kb on - strand, within Pf6N2E2_2115at 2512.849 kb on - strand, within Pf6N2E2_2115at 2512.849 kb on - strand, within Pf6N2E2_2115at 2512.849 kb on - strand, within Pf6N2E2_2115at 2512.852 kb on - strand, within Pf6N2E2_2115at 2512.852 kb on - strand, within Pf6N2E2_2115at 2512.852 kb on - strand, within Pf6N2E2_2115at 2512.852 kb on - strand, within Pf6N2E2_2115at 2512.852 kb on - strand, within Pf6N2E2_2115at 2512.852 kb on - strand, within Pf6N2E2_2115at 2513.001 kb on + strand, within Pf6N2E2_2115at 2513.002 kb on - strand, within Pf6N2E2_2115at 2513.002 kb on - strand, within Pf6N2E2_2115at 2513.002 kb on - strand, within Pf6N2E2_2115

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Per-strain Table

Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M
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2,511,387 - +1.0
2,511,387 - +0.4
2,511,702 + Pf6N2E2_2114 0.44 -0.7
2,511,947 - Pf6N2E2_2114 0.78 -0.5
2,511,947 - Pf6N2E2_2114 0.78 -0.4
2,512,138 - +0.2
2,512,183 - +0.1
2,512,265 - +0.4
2,512,554 + Pf6N2E2_2115 0.14 -0.1
2,512,555 - Pf6N2E2_2115 0.14 +0.3
2,512,555 - Pf6N2E2_2115 0.14 -0.6
2,512,633 + Pf6N2E2_2115 0.20 -0.1
2,512,633 + Pf6N2E2_2115 0.20 +0.4
2,512,633 + Pf6N2E2_2115 0.20 -0.0
2,512,633 + Pf6N2E2_2115 0.20 -0.6
2,512,633 + Pf6N2E2_2115 0.20 +0.0
2,512,634 - Pf6N2E2_2115 0.20 +0.9
2,512,660 - Pf6N2E2_2115 0.22 -0.1
2,512,712 + Pf6N2E2_2115 0.25 -0.2
2,512,791 + Pf6N2E2_2115 0.31 +0.6
2,512,792 - Pf6N2E2_2115 0.31 +0.4
2,512,792 - Pf6N2E2_2115 0.31 -0.6
2,512,792 - Pf6N2E2_2115 0.31 -1.7
2,512,792 - Pf6N2E2_2115 0.31 -1.1
2,512,792 - Pf6N2E2_2115 0.31 -2.1
2,512,848 + Pf6N2E2_2115 0.35 +2.1
2,512,848 + Pf6N2E2_2115 0.35 -0.4
2,512,848 + Pf6N2E2_2115 0.35 +1.9
2,512,849 - Pf6N2E2_2115 0.35 -0.3
2,512,849 - Pf6N2E2_2115 0.35 +0.0
2,512,849 - Pf6N2E2_2115 0.35 -0.2
2,512,849 - Pf6N2E2_2115 0.35 -0.3
2,512,852 - Pf6N2E2_2115 0.35 +0.3
2,512,852 - Pf6N2E2_2115 0.35 +0.9
2,512,852 - Pf6N2E2_2115 0.35 -0.3
2,512,852 - Pf6N2E2_2115 0.35 +0.0
2,512,852 - Pf6N2E2_2115 0.35 -0.7
2,512,852 - Pf6N2E2_2115 0.35 -0.4
2,513,001 + Pf6N2E2_2115 0.45 -0.2
2,513,002 - Pf6N2E2_2115 0.45 +0.4
2,513,002 - Pf6N2E2_2115 0.45 +0.5
2,513,002 - Pf6N2E2_2115 0.45 -1.0

Or see this region's nucleotide sequence