Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1884

Experiment: Europium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1882 and Pf6N2E2_1883 are separated by 101 nucleotidesPf6N2E2_1883 and Pf6N2E2_1884 are separated by 118 nucleotidesPf6N2E2_1884 and Pf6N2E2_1885 are separated by 666 nucleotides Pf6N2E2_1882 - Thioredoxin reductase (EC 1.8.1.9), at 2,233,876 to 2,234,769 _1882 Pf6N2E2_1883 - Transcriptional regulator, TetR family, at 2,234,871 to 2,235,578 _1883 Pf6N2E2_1884 - oxidoreductase, short-chain dehydrogenase/reductase family, at 2,235,697 to 2,236,422 _1884 Pf6N2E2_1885 - Transcriptional regulator, AraC family, at 2,237,089 to 2,237,466 _1885 Position (kb) 2235 2236 2237Strain fitness (log2 ratio) -2 -1 0 1at 2234.791 kb on + strandat 2234.791 kb on + strandat 2234.792 kb on - strandat 2234.843 kb on + strandat 2235.258 kb on + strand, within Pf6N2E2_1883at 2235.276 kb on + strand, within Pf6N2E2_1883at 2235.277 kb on - strand, within Pf6N2E2_1883at 2235.278 kb on + strand, within Pf6N2E2_1883at 2235.279 kb on - strand, within Pf6N2E2_1883at 2235.279 kb on - strand, within Pf6N2E2_1883at 2235.279 kb on - strand, within Pf6N2E2_1883at 2235.279 kb on - strand, within Pf6N2E2_1883at 2235.279 kb on - strand, within Pf6N2E2_1883at 2235.445 kb on + strand, within Pf6N2E2_1883at 2235.453 kb on + strand, within Pf6N2E2_1883at 2235.454 kb on - strand, within Pf6N2E2_1883at 2235.514 kb on - strandat 2235.514 kb on - strandat 2235.580 kb on + strandat 2235.580 kb on + strandat 2235.581 kb on - strandat 2235.581 kb on - strandat 2235.581 kb on - strandat 2235.605 kb on - strandat 2235.698 kb on + strandat 2235.698 kb on + strandat 2235.698 kb on + strandat 2235.698 kb on + strandat 2235.699 kb on - strandat 2235.699 kb on - strandat 2235.699 kb on - strandat 2235.721 kb on + strandat 2235.721 kb on + strandat 2235.877 kb on - strand, within Pf6N2E2_1884at 2235.901 kb on - strand, within Pf6N2E2_1884at 2235.909 kb on + strand, within Pf6N2E2_1884at 2235.909 kb on + strand, within Pf6N2E2_1884at 2235.909 kb on + strand, within Pf6N2E2_1884at 2235.909 kb on + strand, within Pf6N2E2_1884at 2235.910 kb on - strand, within Pf6N2E2_1884at 2235.937 kb on - strand, within Pf6N2E2_1884at 2235.969 kb on - strand, within Pf6N2E2_1884at 2236.014 kb on + strand, within Pf6N2E2_1884at 2236.014 kb on + strand, within Pf6N2E2_1884at 2236.015 kb on - strand, within Pf6N2E2_1884at 2236.393 kb on + strandat 2236.394 kb on - strandat 2236.464 kb on - strandat 2236.464 kb on - strandat 2236.464 kb on - strandat 2236.485 kb on - strandat 2236.496 kb on - strandat 2236.496 kb on - strandat 2236.501 kb on + strandat 2236.501 kb on + strandat 2236.677 kb on + strandat 2236.677 kb on + strandat 2236.768 kb on + strandat 2236.769 kb on - strandat 2236.783 kb on + strandat 2236.784 kb on - strandat 2236.784 kb on - strandat 2236.784 kb on - strandat 2236.784 kb on - strandat 2236.784 kb on - strandat 2236.787 kb on + strandat 2236.788 kb on - strandat 2236.788 kb on - strandat 2236.815 kb on - strandat 2236.880 kb on + strandat 2236.881 kb on - strandat 2236.883 kb on + strandat 2236.884 kb on - strandat 2236.884 kb on - strandat 2236.934 kb on + strandat 2236.941 kb on - strandat 2236.941 kb on - strandat 2236.950 kb on - strandat 2236.950 kb on - strandat 2237.042 kb on + strandat 2237.060 kb on - strandat 2237.062 kb on - strandat 2237.062 kb on - strandat 2237.132 kb on + strand, within Pf6N2E2_1885at 2237.132 kb on + strand, within Pf6N2E2_1885at 2237.151 kb on - strand, within Pf6N2E2_1885at 2237.270 kb on - strand, within Pf6N2E2_1885

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Per-strain Table

Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M
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2,234,791 + +0.7
2,234,791 + +0.3
2,234,792 - +0.3
2,234,843 + -0.3
2,235,258 + Pf6N2E2_1883 0.55 -0.9
2,235,276 + Pf6N2E2_1883 0.57 +0.4
2,235,277 - Pf6N2E2_1883 0.57 +0.3
2,235,278 + Pf6N2E2_1883 0.57 -1.1
2,235,279 - Pf6N2E2_1883 0.58 +0.5
2,235,279 - Pf6N2E2_1883 0.58 -0.1
2,235,279 - Pf6N2E2_1883 0.58 +0.6
2,235,279 - Pf6N2E2_1883 0.58 -0.0
2,235,279 - Pf6N2E2_1883 0.58 +0.3
2,235,445 + Pf6N2E2_1883 0.81 -0.1
2,235,453 + Pf6N2E2_1883 0.82 +0.0
2,235,454 - Pf6N2E2_1883 0.82 -0.9
2,235,514 - +1.0
2,235,514 - -1.8
2,235,580 + +1.0
2,235,580 + -0.3
2,235,581 - -1.0
2,235,581 - +0.7
2,235,581 - +0.3
2,235,605 - -0.2
2,235,698 + +0.7
2,235,698 + -0.4
2,235,698 + -1.2
2,235,698 + -0.2
2,235,699 - -0.3
2,235,699 - +1.0
2,235,699 - -0.4
2,235,721 + +0.5
2,235,721 + -0.2
2,235,877 - Pf6N2E2_1884 0.25 +0.1
2,235,901 - Pf6N2E2_1884 0.28 -1.3
2,235,909 + Pf6N2E2_1884 0.29 +0.6
2,235,909 + Pf6N2E2_1884 0.29 -0.7
2,235,909 + Pf6N2E2_1884 0.29 -0.1
2,235,909 + Pf6N2E2_1884 0.29 -2.1
2,235,910 - Pf6N2E2_1884 0.29 -1.2
2,235,937 - Pf6N2E2_1884 0.33 +0.6
2,235,969 - Pf6N2E2_1884 0.37 +0.8
2,236,014 + Pf6N2E2_1884 0.44 -0.8
2,236,014 + Pf6N2E2_1884 0.44 -1.1
2,236,015 - Pf6N2E2_1884 0.44 +0.5
2,236,393 + +0.3
2,236,394 - +0.4
2,236,464 - +0.6
2,236,464 - +0.8
2,236,464 - +0.5
2,236,485 - -1.4
2,236,496 - -0.1
2,236,496 - -0.2
2,236,501 + -0.2
2,236,501 + +0.5
2,236,677 + +0.1
2,236,677 + -1.1
2,236,768 + -0.9
2,236,769 - -0.9
2,236,783 + -0.4
2,236,784 - -0.7
2,236,784 - +0.9
2,236,784 - -0.9
2,236,784 - +0.0
2,236,784 - -0.8
2,236,787 + +1.1
2,236,788 - +0.2
2,236,788 - -0.4
2,236,815 - -1.2
2,236,880 + -1.1
2,236,881 - -0.1
2,236,883 + +0.5
2,236,884 - +0.3
2,236,884 - -0.4
2,236,934 + -0.2
2,236,941 - -0.4
2,236,941 - -0.1
2,236,950 - -0.9
2,236,950 - -0.0
2,237,042 + +1.3
2,237,060 - +1.1
2,237,062 - +0.4
2,237,062 - +1.7
2,237,132 + Pf6N2E2_1885 0.11 -0.4
2,237,132 + Pf6N2E2_1885 0.11 -0.6
2,237,151 - Pf6N2E2_1885 0.16 +0.5
2,237,270 - Pf6N2E2_1885 0.48 +0.1

Or see this region's nucleotide sequence