Experiment: Europium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1705 and Pf6N2E2_1706 overlap by 4 nucleotides Pf6N2E2_1706 and Pf6N2E2_1707 are separated by 4 nucleotides Pf6N2E2_1707 and Pf6N2E2_1708 overlap by 42 nucleotides Pf6N2E2_1708 and Pf6N2E2_1709 are separated by 291 nucleotides
Pf6N2E2_1705 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 2,013,787 to 2,014,557
_1705
Pf6N2E2_1706 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 2,014,554 to 2,015,525
_1706
Pf6N2E2_1707 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 2,015,530 to 2,016,915
_1707
Pf6N2E2_1708 - hypothetical protein, at 2,016,874 to 2,017,026
_1708
Pf6N2E2_1709 - multidrug resistance transporter, Bcr/CflA family, at 2,017,318 to 2,018,538
_1709
Position (kb)
2015
2016
2017 Strain fitness (log2 ratio)
-2
-1
0
1 at 2014.573 kb on + strand at 2014.574 kb on - strand at 2014.574 kb on - strand at 2014.611 kb on + strand at 2015.187 kb on + strand, within Pf6N2E2_1706 at 2015.199 kb on + strand, within Pf6N2E2_1706 at 2015.199 kb on + strand, within Pf6N2E2_1706 at 2015.199 kb on + strand, within Pf6N2E2_1706 at 2015.200 kb on - strand, within Pf6N2E2_1706 at 2015.515 kb on + strand at 2015.515 kb on + strand at 2015.516 kb on - strand at 2015.757 kb on - strand, within Pf6N2E2_1707 at 2016.036 kb on - strand, within Pf6N2E2_1707 at 2016.044 kb on + strand, within Pf6N2E2_1707 at 2016.044 kb on + strand, within Pf6N2E2_1707 at 2016.443 kb on + strand, within Pf6N2E2_1707 at 2016.444 kb on - strand, within Pf6N2E2_1707 at 2016.459 kb on - strand, within Pf6N2E2_1707 at 2016.536 kb on + strand, within Pf6N2E2_1707 at 2016.536 kb on + strand, within Pf6N2E2_1707 at 2016.536 kb on + strand, within Pf6N2E2_1707 at 2016.762 kb on - strand, within Pf6N2E2_1707 at 2016.762 kb on - strand, within Pf6N2E2_1707 at 2016.762 kb on - strand, within Pf6N2E2_1707 at 2016.762 kb on - strand, within Pf6N2E2_1707 at 2016.762 kb on - strand, within Pf6N2E2_1707 at 2016.762 kb on - strand, within Pf6N2E2_1707 at 2016.762 kb on - strand, within Pf6N2E2_1707 at 2016.766 kb on - strand, within Pf6N2E2_1707 at 2016.852 kb on - strand at 2017.127 kb on + strand at 2017.128 kb on - strand at 2017.128 kb on - strand at 2017.128 kb on - strand at 2017.128 kb on - strand at 2017.138 kb on + strand at 2017.139 kb on - strand at 2017.139 kb on - strand at 2017.139 kb on - strand at 2017.195 kb on + strand at 2017.300 kb on + strand at 2017.301 kb on - strand at 2017.317 kb on + strand at 2017.317 kb on + strand at 2017.317 kb on + strand at 2017.317 kb on + strand at 2017.317 kb on + strand at 2017.317 kb on + strand at 2017.317 kb on + strand at 2017.317 kb on + strand at 2017.318 kb on - strand at 2017.318 kb on - strand at 2017.318 kb on - strand at 2017.318 kb on - strand at 2017.904 kb on + strand, within Pf6N2E2_1709 at 2017.904 kb on + strand, within Pf6N2E2_1709
Per-strain Table
Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M remove 2,014,573 + +0.7 2,014,574 - -0.4 2,014,574 - -0.8 2,014,611 + -0.2 2,015,187 + Pf6N2E2_1706 0.65 +0.7 2,015,199 + Pf6N2E2_1706 0.66 -0.2 2,015,199 + Pf6N2E2_1706 0.66 -0.4 2,015,199 + Pf6N2E2_1706 0.66 +0.1 2,015,200 - Pf6N2E2_1706 0.66 +0.4 2,015,515 + -1.0 2,015,515 + +0.3 2,015,516 - +0.4 2,015,757 - Pf6N2E2_1707 0.16 -1.8 2,016,036 - Pf6N2E2_1707 0.37 -0.3 2,016,044 + Pf6N2E2_1707 0.37 -0.3 2,016,044 + Pf6N2E2_1707 0.37 -1.3 2,016,443 + Pf6N2E2_1707 0.66 -0.6 2,016,444 - Pf6N2E2_1707 0.66 -0.6 2,016,459 - Pf6N2E2_1707 0.67 +0.2 2,016,536 + Pf6N2E2_1707 0.73 +0.1 2,016,536 + Pf6N2E2_1707 0.73 +0.5 2,016,536 + Pf6N2E2_1707 0.73 -0.2 2,016,762 - Pf6N2E2_1707 0.89 -1.4 2,016,762 - Pf6N2E2_1707 0.89 -0.0 2,016,762 - Pf6N2E2_1707 0.89 -1.0 2,016,762 - Pf6N2E2_1707 0.89 -0.0 2,016,762 - Pf6N2E2_1707 0.89 -1.1 2,016,762 - Pf6N2E2_1707 0.89 -1.0 2,016,762 - Pf6N2E2_1707 0.89 -0.7 2,016,766 - Pf6N2E2_1707 0.89 -0.4 2,016,852 - +0.6 2,017,127 + -0.3 2,017,128 - +0.7 2,017,128 - -0.6 2,017,128 - +0.4 2,017,128 - +0.0 2,017,138 + +0.4 2,017,139 - -0.3 2,017,139 - -0.6 2,017,139 - -0.6 2,017,195 + -0.1 2,017,300 + +0.4 2,017,301 - -0.8 2,017,317 + +0.3 2,017,317 + -0.4 2,017,317 + -0.2 2,017,317 + -0.5 2,017,317 + +0.1 2,017,317 + -0.3 2,017,317 + +0.6 2,017,317 + +1.4 2,017,318 - +0.3 2,017,318 - -0.6 2,017,318 - +0.6 2,017,318 - +0.8 2,017,904 + Pf6N2E2_1709 0.48 +1.2 2,017,904 + Pf6N2E2_1709 0.48 -0.4
Or see this region's nucleotide sequence