Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1525

Experiment: Europium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1523 and Pf6N2E2_1524 are separated by 246 nucleotidesPf6N2E2_1524 and Pf6N2E2_1525 are separated by 51 nucleotidesPf6N2E2_1525 and Pf6N2E2_1526 are separated by 100 nucleotides Pf6N2E2_1523 - Universal stress protein family 5, at 1,781,075 to 1,781,968 _1523 Pf6N2E2_1524 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 1,782,215 to 1,782,778 _1524 Pf6N2E2_1525 - Universal stress protein family 5, at 1,782,830 to 1,783,741 _1525 Pf6N2E2_1526 - MgtC family, at 1,783,842 to 1,785,092 _1526 Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -2 -1 0 1 2at 1781.946 kb on - strandat 1782.476 kb on + strand, within Pf6N2E2_1524at 1782.476 kb on + strand, within Pf6N2E2_1524at 1782.476 kb on + strand, within Pf6N2E2_1524at 1782.477 kb on - strand, within Pf6N2E2_1524at 1782.477 kb on - strand, within Pf6N2E2_1524at 1782.477 kb on - strand, within Pf6N2E2_1524at 1782.662 kb on + strand, within Pf6N2E2_1524at 1782.662 kb on + strand, within Pf6N2E2_1524at 1782.663 kb on - strand, within Pf6N2E2_1524at 1782.663 kb on - strand, within Pf6N2E2_1524at 1782.771 kb on - strandat 1782.805 kb on - strandat 1783.087 kb on - strand, within Pf6N2E2_1525at 1783.135 kb on - strandat 1783.434 kb on + strand, within Pf6N2E2_1525at 1783.435 kb on - strand, within Pf6N2E2_1525at 1783.435 kb on - strand, within Pf6N2E2_1525at 1783.435 kb on - strand, within Pf6N2E2_1525at 1783.552 kb on - strand, within Pf6N2E2_1525at 1783.633 kb on + strand, within Pf6N2E2_1525at 1783.633 kb on + strand, within Pf6N2E2_1525at 1783.634 kb on - strand, within Pf6N2E2_1525at 1783.722 kb on - strandat 1783.722 kb on - strandat 1783.772 kb on + strandat 1783.773 kb on - strandat 1783.911 kb on + strandat 1783.915 kb on + strandat 1783.915 kb on + strandat 1784.266 kb on + strand, within Pf6N2E2_1526at 1784.267 kb on - strand, within Pf6N2E2_1526at 1784.267 kb on - strand, within Pf6N2E2_1526at 1784.275 kb on - strand, within Pf6N2E2_1526at 1784.275 kb on - strand, within Pf6N2E2_1526at 1784.503 kb on + strand, within Pf6N2E2_1526at 1784.602 kb on + strand, within Pf6N2E2_1526at 1784.603 kb on - strand, within Pf6N2E2_1526at 1784.603 kb on - strand, within Pf6N2E2_1526

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Per-strain Table

Position Strand Gene LocusTag Fraction Europium(III) chloride 0.000195313 M
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1,781,946 - -0.1
1,782,476 + Pf6N2E2_1524 0.46 +0.1
1,782,476 + Pf6N2E2_1524 0.46 +0.5
1,782,476 + Pf6N2E2_1524 0.46 +1.1
1,782,477 - Pf6N2E2_1524 0.46 -0.7
1,782,477 - Pf6N2E2_1524 0.46 -0.1
1,782,477 - Pf6N2E2_1524 0.46 +0.7
1,782,662 + Pf6N2E2_1524 0.79 -0.4
1,782,662 + Pf6N2E2_1524 0.79 +0.2
1,782,663 - Pf6N2E2_1524 0.79 +0.4
1,782,663 - Pf6N2E2_1524 0.79 +0.1
1,782,771 - -0.1
1,782,805 - -1.9
1,783,087 - Pf6N2E2_1525 0.28 +0.6
1,783,135 - +1.5
1,783,434 + Pf6N2E2_1525 0.66 -0.8
1,783,435 - Pf6N2E2_1525 0.66 -1.4
1,783,435 - Pf6N2E2_1525 0.66 +0.2
1,783,435 - Pf6N2E2_1525 0.66 -1.2
1,783,552 - Pf6N2E2_1525 0.79 -1.0
1,783,633 + Pf6N2E2_1525 0.88 -1.7
1,783,633 + Pf6N2E2_1525 0.88 +0.1
1,783,634 - Pf6N2E2_1525 0.88 -0.7
1,783,722 - +0.3
1,783,722 - -0.5
1,783,772 + +2.0
1,783,773 - -1.3
1,783,911 + +0.6
1,783,915 + +0.4
1,783,915 + +0.0
1,784,266 + Pf6N2E2_1526 0.34 -0.3
1,784,267 - Pf6N2E2_1526 0.34 +0.1
1,784,267 - Pf6N2E2_1526 0.34 +0.4
1,784,275 - Pf6N2E2_1526 0.35 -0.3
1,784,275 - Pf6N2E2_1526 0.35 +0.3
1,784,503 + Pf6N2E2_1526 0.53 +0.2
1,784,602 + Pf6N2E2_1526 0.61 +0.5
1,784,603 - Pf6N2E2_1526 0.61 -0.3
1,784,603 - Pf6N2E2_1526 0.61 +0.2

Or see this region's nucleotide sequence