Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06570

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06569 and H281DRAFT_06570 are separated by 739 nucleotidesH281DRAFT_06570 and H281DRAFT_06571 overlap by 4 nucleotidesH281DRAFT_06571 and H281DRAFT_06572 are separated by 278 nucleotides H281DRAFT_06569: H281DRAFT_06569 - hypothetical protein, at 9,942 to 10,133 _06569 H281DRAFT_06570: H281DRAFT_06570 - hypothetical protein, at 10,873 to 11,676 _06570 H281DRAFT_06571: H281DRAFT_06571 - FOG: Ankyrin repeat, at 11,673 to 12,278 _06571 H281DRAFT_06572: H281DRAFT_06572 - Glutathione S-transferase, at 12,557 to 13,270 _06572 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 10.009 kb on + strand, within H281DRAFT_06569at 10.009 kb on + strand, within H281DRAFT_06569at 10.010 kb on - strand, within H281DRAFT_06569at 10.044 kb on + strand, within H281DRAFT_06569at 10.045 kb on - strand, within H281DRAFT_06569at 10.101 kb on + strand, within H281DRAFT_06569at 10.101 kb on + strand, within H281DRAFT_06569at 10.101 kb on + strand, within H281DRAFT_06569at 10.207 kb on + strandat 10.208 kb on - strandat 10.245 kb on + strandat 10.283 kb on + strandat 10.284 kb on - strandat 10.289 kb on - strandat 10.394 kb on + strandat 10.540 kb on - strandat 10.540 kb on - strandat 10.571 kb on + strandat 10.650 kb on + strandat 10.650 kb on + strandat 10.651 kb on - strandat 10.651 kb on - strandat 10.651 kb on - strandat 10.910 kb on + strandat 10.910 kb on + strandat 10.974 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.979 kb on - strand, within H281DRAFT_06570at 11.002 kb on + strand, within H281DRAFT_06570at 11.004 kb on + strand, within H281DRAFT_06570at 11.131 kb on + strand, within H281DRAFT_06570at 11.227 kb on + strand, within H281DRAFT_06570at 11.228 kb on - strand, within H281DRAFT_06570at 11.228 kb on - strand, within H281DRAFT_06570at 11.256 kb on + strand, within H281DRAFT_06570at 11.273 kb on + strandat 11.273 kb on + strand, within H281DRAFT_06570at 11.316 kb on + strand, within H281DRAFT_06570at 11.384 kb on - strand, within H281DRAFT_06570at 11.384 kb on - strand, within H281DRAFT_06570at 11.387 kb on - strand, within H281DRAFT_06570at 11.465 kb on + strand, within H281DRAFT_06570at 11.500 kb on + strand, within H281DRAFT_06570at 11.501 kb on - strand, within H281DRAFT_06570at 11.501 kb on - strand, within H281DRAFT_06570at 11.585 kb on + strand, within H281DRAFT_06570at 11.585 kb on + strand, within H281DRAFT_06570at 11.647 kb on - strandat 11.725 kb on - strandat 11.725 kb on - strandat 11.767 kb on - strand, within H281DRAFT_06571at 11.819 kb on - strand, within H281DRAFT_06571at 11.905 kb on - strand, within H281DRAFT_06571at 11.982 kb on - strand, within H281DRAFT_06571at 12.028 kb on + strand, within H281DRAFT_06571at 12.033 kb on + strand, within H281DRAFT_06571at 12.036 kb on + strand, within H281DRAFT_06571at 12.036 kb on + strand, within H281DRAFT_06571at 12.036 kb on + strand, within H281DRAFT_06571at 12.086 kb on + strand, within H281DRAFT_06571at 12.213 kb on + strand, within H281DRAFT_06571at 12.213 kb on + strand, within H281DRAFT_06571at 12.213 kb on + strand, within H281DRAFT_06571at 12.252 kb on + strandat 12.266 kb on + strandat 12.267 kb on - strandat 12.267 kb on - strandat 12.267 kb on - strandat 12.267 kb on - strandat 12.269 kb on - strandat 12.269 kb on - strandat 12.385 kb on - strandat 12.400 kb on + strandat 12.400 kb on + strandat 12.400 kb on + strandat 12.400 kb on + strandat 12.401 kb on - strandat 12.428 kb on + strandat 12.428 kb on + strandat 12.547 kb on + strandat 12.547 kb on + strandat 12.548 kb on - strandat 12.548 kb on - strandat 12.548 kb on - strandat 12.548 kb on - strandat 12.548 kb on - strandat 12.618 kb on - strandat 12.642 kb on + strand, within H281DRAFT_06572at 12.643 kb on - strand, within H281DRAFT_06572

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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10,009 + H281DRAFT_06569 0.35 -0.4
10,009 + H281DRAFT_06569 0.35 -2.5
10,010 - H281DRAFT_06569 0.35 +0.3
10,044 + H281DRAFT_06569 0.53 +0.3
10,045 - H281DRAFT_06569 0.54 -0.1
10,101 + H281DRAFT_06569 0.83 +0.8
10,101 + H281DRAFT_06569 0.83 -0.2
10,101 + H281DRAFT_06569 0.83 -0.2
10,207 + -0.1
10,208 - +0.9
10,245 + +0.1
10,283 + -0.2
10,284 - -0.3
10,289 - +0.2
10,394 + -0.4
10,540 - +0.7
10,540 - +0.4
10,571 + -0.8
10,650 + -0.6
10,650 + -1.3
10,651 - -0.4
10,651 - -0.3
10,651 - -0.7
10,910 + -0.3
10,910 + -1.1
10,974 + H281DRAFT_06570 0.13 -0.1
10,978 + H281DRAFT_06570 0.13 +0.5
10,978 + H281DRAFT_06570 0.13 +0.3
10,978 + H281DRAFT_06570 0.13 +0.0
10,978 + H281DRAFT_06570 0.13 +1.7
10,979 - H281DRAFT_06570 0.13 -0.1
11,002 + H281DRAFT_06570 0.16 -0.0
11,004 + H281DRAFT_06570 0.16 +0.1
11,131 + H281DRAFT_06570 0.32 -0.9
11,227 + H281DRAFT_06570 0.44 +0.5
11,228 - H281DRAFT_06570 0.44 -0.3
11,228 - H281DRAFT_06570 0.44 +0.4
11,256 + H281DRAFT_06570 0.48 +0.4
11,273 + +0.4
11,273 + H281DRAFT_06570 0.50 +0.1
11,316 + H281DRAFT_06570 0.55 -0.2
11,384 - H281DRAFT_06570 0.64 +0.1
11,384 - H281DRAFT_06570 0.64 +0.5
11,387 - H281DRAFT_06570 0.64 +0.3
11,465 + H281DRAFT_06570 0.74 -0.6
11,500 + H281DRAFT_06570 0.78 -0.6
11,501 - H281DRAFT_06570 0.78 -1.2
11,501 - H281DRAFT_06570 0.78 -0.3
11,585 + H281DRAFT_06570 0.89 +0.8
11,585 + H281DRAFT_06570 0.89 -0.6
11,647 - +0.6
11,725 - +0.3
11,725 - +0.1
11,767 - H281DRAFT_06571 0.16 -0.5
11,819 - H281DRAFT_06571 0.24 -0.0
11,905 - H281DRAFT_06571 0.38 -1.1
11,982 - H281DRAFT_06571 0.51 -0.3
12,028 + H281DRAFT_06571 0.59 -0.2
12,033 + H281DRAFT_06571 0.59 -0.4
12,036 + H281DRAFT_06571 0.60 -0.3
12,036 + H281DRAFT_06571 0.60 -1.8
12,036 + H281DRAFT_06571 0.60 +0.6
12,086 + H281DRAFT_06571 0.68 +1.5
12,213 + H281DRAFT_06571 0.89 -0.8
12,213 + H281DRAFT_06571 0.89 +1.4
12,213 + H281DRAFT_06571 0.89 +0.2
12,252 + -0.0
12,266 + -0.2
12,267 - +0.1
12,267 - +0.4
12,267 - -0.8
12,267 - -0.1
12,269 - +0.0
12,269 - +0.2
12,385 - -0.3
12,400 + +0.6
12,400 + +0.3
12,400 + -0.6
12,400 + +0.8
12,401 - -0.1
12,428 + -0.4
12,428 + +0.2
12,547 + +1.4
12,547 + -0.1
12,548 - -0.8
12,548 - -0.4
12,548 - +0.3
12,548 - -1.3
12,548 - -1.6
12,618 - -0.5
12,642 + H281DRAFT_06572 0.12 +0.0
12,643 - H281DRAFT_06572 0.12 -0.1

Or see this region's nucleotide sequence