Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06528

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06527 and H281DRAFT_06528 overlap by 4 nucleotidesH281DRAFT_06528 and H281DRAFT_06529 overlap by 4 nucleotidesH281DRAFT_06529 and H281DRAFT_06530 are separated by 2 nucleotides H281DRAFT_06527: H281DRAFT_06527 - uroporphyrin-III C-methyltransferase, at 9,236 to 10,003 _06527 H281DRAFT_06528: H281DRAFT_06528 - cobalt-precorrin 5A hydrolase, at 10,000 to 10,422 _06528 H281DRAFT_06529: H281DRAFT_06529 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 10,419 to 11,021 _06529 H281DRAFT_06530: H281DRAFT_06530 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11), at 11,024 to 12,322 _06530 Position (kb) 9 10 11Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 9.393 kb on - strand, within H281DRAFT_06527at 9.571 kb on + strand, within H281DRAFT_06527at 9.572 kb on - strand, within H281DRAFT_06527at 9.625 kb on + strand, within H281DRAFT_06527at 9.654 kb on + strand, within H281DRAFT_06527at 9.655 kb on - strand, within H281DRAFT_06527at 9.734 kb on + strand, within H281DRAFT_06527at 9.735 kb on - strand, within H281DRAFT_06527at 9.735 kb on - strand, within H281DRAFT_06527at 10.038 kb on + strandat 10.038 kb on + strandat 10.038 kb on + strandat 10.039 kb on - strandat 10.039 kb on - strandat 10.039 kb on - strandat 10.119 kb on + strand, within H281DRAFT_06528at 10.120 kb on - strand, within H281DRAFT_06528at 10.120 kb on - strand, within H281DRAFT_06528at 10.634 kb on + strand, within H281DRAFT_06529at 10.635 kb on - strand, within H281DRAFT_06529at 10.788 kb on + strandat 10.789 kb on - strand, within H281DRAFT_06529at 10.831 kb on - strand, within H281DRAFT_06529at 10.836 kb on + strand, within H281DRAFT_06529at 10.837 kb on - strand, within H281DRAFT_06529at 10.978 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
9,393 - H281DRAFT_06527 0.20 -2.0
9,571 + H281DRAFT_06527 0.44 -1.0
9,572 - H281DRAFT_06527 0.44 -1.0
9,625 + H281DRAFT_06527 0.51 +0.3
9,654 + H281DRAFT_06527 0.54 +0.6
9,655 - H281DRAFT_06527 0.55 +1.0
9,734 + H281DRAFT_06527 0.65 +0.4
9,735 - H281DRAFT_06527 0.65 -1.2
9,735 - H281DRAFT_06527 0.65 -0.9
10,038 + +0.7
10,038 + +0.2
10,038 + -0.0
10,039 - +0.0
10,039 - -0.5
10,039 - -1.7
10,119 + H281DRAFT_06528 0.28 -0.1
10,120 - H281DRAFT_06528 0.28 -1.0
10,120 - H281DRAFT_06528 0.28 -2.4
10,634 + H281DRAFT_06529 0.36 -1.6
10,635 - H281DRAFT_06529 0.36 -2.5
10,788 + +1.8
10,789 - H281DRAFT_06529 0.61 -3.8
10,831 - H281DRAFT_06529 0.68 -4.2
10,836 + H281DRAFT_06529 0.69 -3.8
10,837 - H281DRAFT_06529 0.69 -1.8
10,978 - -4.2

Or see this region's nucleotide sequence