Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06445

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06444 and H281DRAFT_06445 are separated by 42 nucleotidesH281DRAFT_06445 and H281DRAFT_06446 are separated by 19 nucleotides H281DRAFT_06444: H281DRAFT_06444 - cyclic pyranopterin monophosphate synthase subunit MoaA, at 50,014 to 51,117 _06444 H281DRAFT_06445: H281DRAFT_06445 - Molybdopterin synthase catalytic subunit, at 51,160 to 51,717 _06445 H281DRAFT_06446: H281DRAFT_06446 - molybdopterin synthase subunit MoaD (EC 2.8.1.12), at 51,737 to 51,994 _06446 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 50.160 kb on + strand, within H281DRAFT_06444at 50.165 kb on - strand, within H281DRAFT_06444at 50.165 kb on - strand, within H281DRAFT_06444at 50.165 kb on - strand, within H281DRAFT_06444at 50.197 kb on + strandat 50.198 kb on - strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strand, within H281DRAFT_06444at 50.915 kb on + strandat 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.916 kb on - strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.917 kb on + strand, within H281DRAFT_06444at 50.918 kb on - strand, within H281DRAFT_06444at 50.918 kb on - strand, within H281DRAFT_06444at 50.919 kb on + strand, within H281DRAFT_06444at 50.919 kb on + strand, within H281DRAFT_06444at 50.920 kb on - strand, within H281DRAFT_06444at 50.920 kb on - strand, within H281DRAFT_06444at 50.920 kb on - strand, within H281DRAFT_06444at 51.006 kb on + strand, within H281DRAFT_06444at 51.083 kb on - strandat 51.087 kb on + strandat 51.087 kb on + strandat 51.087 kb on + strandat 51.088 kb on - strandat 51.088 kb on - strandat 51.133 kb on + strandat 51.134 kb on - strandat 51.134 kb on - strandat 51.458 kb on + strand, within H281DRAFT_06445at 51.755 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 52.000 kb on - strandat 52.039 kb on + strandat 52.201 kb on - strandat 52.242 kb on - strandat 52.288 kb on - strandat 52.391 kb on + strandat 52.391 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.558 kb on + strandat 52.558 kb on + strandat 52.567 kb on + strandat 52.567 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
50,160 + H281DRAFT_06444 0.13 -0.2
50,165 - H281DRAFT_06444 0.14 -0.1
50,165 - H281DRAFT_06444 0.14 -0.1
50,165 - H281DRAFT_06444 0.14 -0.0
50,197 + -2.2
50,198 - H281DRAFT_06444 0.17 -0.0
50,915 + H281DRAFT_06444 0.82 -0.4
50,915 + H281DRAFT_06444 0.82 -1.5
50,915 + H281DRAFT_06444 0.82 +0.1
50,915 + H281DRAFT_06444 0.82 -0.3
50,915 + H281DRAFT_06444 0.82 +0.3
50,915 + H281DRAFT_06444 0.82 -0.1
50,915 + +0.5
50,916 - H281DRAFT_06444 0.82 -1.4
50,916 - H281DRAFT_06444 0.82 +0.9
50,916 - H281DRAFT_06444 0.82 +0.0
50,916 - H281DRAFT_06444 0.82 +0.7
50,916 - H281DRAFT_06444 0.82 -0.2
50,917 + H281DRAFT_06444 0.82 -0.0
50,917 + H281DRAFT_06444 0.82 +0.6
50,917 + H281DRAFT_06444 0.82 +0.0
50,917 + H281DRAFT_06444 0.82 -0.3
50,917 + H281DRAFT_06444 0.82 -0.5
50,917 + H281DRAFT_06444 0.82 -0.0
50,918 - H281DRAFT_06444 0.82 +0.6
50,918 - H281DRAFT_06444 0.82 -0.9
50,919 + H281DRAFT_06444 0.82 -0.3
50,919 + H281DRAFT_06444 0.82 -0.5
50,920 - H281DRAFT_06444 0.82 -0.4
50,920 - H281DRAFT_06444 0.82 +0.5
50,920 - H281DRAFT_06444 0.82 +0.2
51,006 + H281DRAFT_06444 0.90 -0.5
51,083 - +0.0
51,087 + -1.1
51,087 + +0.3
51,087 + +0.1
51,088 - -0.2
51,088 - -0.0
51,133 + +1.0
51,134 - -0.4
51,134 - +0.2
51,458 + H281DRAFT_06445 0.53 +0.5
51,755 + -0.6
51,999 + +0.3
51,999 + +0.1
51,999 + +0.2
51,999 + +0.2
52,000 - -0.1
52,039 + +1.8
52,201 - -1.2
52,242 - +0.4
52,288 - +0.2
52,391 + +0.4
52,391 + +0.9
52,398 + -0.6
52,398 + -0.9
52,398 + +0.8
52,399 - +0.1
52,399 - -0.4
52,399 - -0.0
52,558 + -0.3
52,558 + -0.1
52,567 + -0.9
52,567 + -2.4

Or see this region's nucleotide sequence