Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06044

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06042 and H281DRAFT_06043 are separated by 51 nucleotidesH281DRAFT_06043 and H281DRAFT_06044 are separated by 114 nucleotidesH281DRAFT_06044 and H281DRAFT_06045 overlap by 4 nucleotidesH281DRAFT_06045 and H281DRAFT_06046 are separated by 34 nucleotides H281DRAFT_06042: H281DRAFT_06042 - transcriptional regulator, LysR family, at 45,428 to 46,321 _06042 H281DRAFT_06043: H281DRAFT_06043 - hypothetical protein, at 46,373 to 46,930 _06043 H281DRAFT_06044: H281DRAFT_06044 - Protein of unknown function (DUF2384), at 47,045 to 47,482 _06044 H281DRAFT_06045: H281DRAFT_06045 - RES domain-containing protein, at 47,479 to 48,180 _06045 H281DRAFT_06046: H281DRAFT_06046 - serine/threonine protein phosphatase 1, at 48,215 to 48,952 _06046 Position (kb) 47 48Strain fitness (log2 ratio) -1 0 1 2at 46.450 kb on + strand, within H281DRAFT_06043at 46.663 kb on + strand, within H281DRAFT_06043at 46.663 kb on + strand, within H281DRAFT_06043at 46.858 kb on + strand, within H281DRAFT_06043at 46.859 kb on - strand, within H281DRAFT_06043at 46.859 kb on - strand, within H281DRAFT_06043at 46.913 kb on + strandat 46.914 kb on - strandat 46.914 kb on - strandat 46.914 kb on - strandat 46.976 kb on - strandat 46.976 kb on - strandat 46.976 kb on - strandat 46.977 kb on + strandat 46.977 kb on + strandat 46.977 kb on + strandat 46.977 kb on + strandat 46.977 kb on + strandat 46.978 kb on - strandat 46.978 kb on - strandat 46.978 kb on - strandat 47.022 kb on + strandat 47.027 kb on - strandat 47.222 kb on + strand, within H281DRAFT_06044at 47.269 kb on + strand, within H281DRAFT_06044at 47.303 kb on + strand, within H281DRAFT_06044at 47.303 kb on + strand, within H281DRAFT_06044at 47.365 kb on + strand, within H281DRAFT_06044at 47.450 kb on + strandat 47.451 kb on - strandat 47.617 kb on + strand, within H281DRAFT_06045at 47.618 kb on - strand, within H281DRAFT_06045at 47.618 kb on - strand, within H281DRAFT_06045at 47.788 kb on + strand, within H281DRAFT_06045at 47.831 kb on - strand, within H281DRAFT_06045at 47.893 kb on + strand, within H281DRAFT_06045at 47.893 kb on + strand, within H281DRAFT_06045at 47.895 kb on + strand, within H281DRAFT_06045at 47.974 kb on + strand, within H281DRAFT_06045at 47.975 kb on - strand, within H281DRAFT_06045at 47.975 kb on - strand, within H281DRAFT_06045at 48.124 kb on + strandat 48.124 kb on + strandat 48.124 kb on + strandat 48.124 kb on + strandat 48.124 kb on + strandat 48.125 kb on - strandat 48.382 kb on + strand, within H281DRAFT_06046

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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46,450 + H281DRAFT_06043 0.14 +0.2
46,663 + H281DRAFT_06043 0.52 +1.4
46,663 + H281DRAFT_06043 0.52 -0.1
46,858 + H281DRAFT_06043 0.87 +0.3
46,859 - H281DRAFT_06043 0.87 -0.0
46,859 - H281DRAFT_06043 0.87 +0.3
46,913 + -0.4
46,914 - -0.2
46,914 - +0.3
46,914 - +0.7
46,976 - +0.3
46,976 - +0.2
46,976 - -0.2
46,977 + -0.3
46,977 + -0.2
46,977 + +0.3
46,977 + +0.2
46,977 + +0.0
46,978 - +0.2
46,978 - +0.4
46,978 - -0.4
47,022 + +0.7
47,027 - -0.5
47,222 + H281DRAFT_06044 0.40 +0.1
47,269 + H281DRAFT_06044 0.51 -0.0
47,303 + H281DRAFT_06044 0.59 +0.8
47,303 + H281DRAFT_06044 0.59 +1.1
47,365 + H281DRAFT_06044 0.73 +1.6
47,450 + -0.1
47,451 - -0.2
47,617 + H281DRAFT_06045 0.20 -0.2
47,618 - H281DRAFT_06045 0.20 +0.1
47,618 - H281DRAFT_06045 0.20 +0.4
47,788 + H281DRAFT_06045 0.44 +0.3
47,831 - H281DRAFT_06045 0.50 +0.7
47,893 + H281DRAFT_06045 0.59 +0.2
47,893 + H281DRAFT_06045 0.59 -0.2
47,895 + H281DRAFT_06045 0.59 +0.7
47,974 + H281DRAFT_06045 0.71 +0.6
47,975 - H281DRAFT_06045 0.71 +0.3
47,975 - H281DRAFT_06045 0.71 -0.3
48,124 + +0.8
48,124 + +1.9
48,124 + -0.1
48,124 + +0.2
48,124 + +0.4
48,125 - -0.4
48,382 + H281DRAFT_06046 0.23 +1.1

Or see this region's nucleotide sequence