Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05834

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05832 and H281DRAFT_05833 are separated by 216 nucleotidesH281DRAFT_05833 and H281DRAFT_05834 are separated by 78 nucleotidesH281DRAFT_05834 and H281DRAFT_05835 are separated by 133 nucleotides H281DRAFT_05832: H281DRAFT_05832 - hypothetical protein, at 108,810 to 109,022 _05832 H281DRAFT_05833: H281DRAFT_05833 - hypothetical protein, at 109,239 to 109,517 _05833 H281DRAFT_05834: H281DRAFT_05834 - hypothetical protein, at 109,596 to 110,402 _05834 H281DRAFT_05835: H281DRAFT_05835 - 3-hydroxyisobutyrate dehydrogenase, at 110,536 to 111,405 _05835 Position (kb) 109 110 111Strain fitness (log2 ratio) -2 -1 0 1at 108.663 kb on + strandat 108.663 kb on + strandat 108.663 kb on + strandat 108.664 kb on - strandat 108.667 kb on + strandat 108.667 kb on + strandat 108.667 kb on + strandat 108.668 kb on - strandat 108.668 kb on - strandat 108.668 kb on - strandat 108.695 kb on + strandat 108.696 kb on - strandat 108.705 kb on - strandat 108.705 kb on - strandat 108.705 kb on - strandat 108.707 kb on + strandat 108.707 kb on + strandat 108.708 kb on - strandat 108.708 kb on - strandat 108.765 kb on - strandat 108.765 kb on - strandat 109.020 kb on + strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.021 kb on - strandat 109.210 kb on - strandat 109.517 kb on + strandat 109.517 kb on + strandat 109.517 kb on + strandat 109.538 kb on - strandat 109.538 kb on - strandat 109.538 kb on - strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.541 kb on + strandat 109.542 kb on - strandat 109.542 kb on - strandat 109.542 kb on - strandat 109.555 kb on - strandat 109.555 kb on - strandat 109.555 kb on - strandat 109.845 kb on + strand, within H281DRAFT_05834at 109.845 kb on + strand, within H281DRAFT_05834at 109.846 kb on - strand, within H281DRAFT_05834at 109.930 kb on + strand, within H281DRAFT_05834at 109.930 kb on + strand, within H281DRAFT_05834at 109.931 kb on - strand, within H281DRAFT_05834at 110.033 kb on - strand, within H281DRAFT_05834at 110.044 kb on + strand, within H281DRAFT_05834at 110.044 kb on + strand, within H281DRAFT_05834at 110.051 kb on + strand, within H281DRAFT_05834at 110.250 kb on + strand, within H281DRAFT_05834at 110.250 kb on + strand, within H281DRAFT_05834at 110.412 kb on - strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.484 kb on + strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.485 kb on - strandat 110.504 kb on + strandat 110.505 kb on - strandat 110.518 kb on + strandat 110.519 kb on - strandat 110.519 kb on - strandat 110.612 kb on + strandat 110.612 kb on + strandat 110.612 kb on + strandat 110.612 kb on + strandat 110.612 kb on + strandat 110.613 kb on - strandat 110.613 kb on - strandat 110.618 kb on + strandat 110.618 kb on + strandat 110.618 kb on + strandat 110.619 kb on - strandat 110.619 kb on - strandat 110.619 kb on - strandat 110.869 kb on + strand, within H281DRAFT_05835at 110.870 kb on - strand, within H281DRAFT_05835at 111.181 kb on + strand, within H281DRAFT_05835at 111.181 kb on + strand, within H281DRAFT_05835at 111.209 kb on - strand, within H281DRAFT_05835

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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108,663 + +0.5
108,663 + -0.5
108,663 + +0.5
108,664 - +0.3
108,667 + +0.8
108,667 + -1.2
108,667 + -0.8
108,668 - +0.6
108,668 - -0.1
108,668 - -0.5
108,695 + +0.1
108,696 - +0.2
108,705 - -0.4
108,705 - +0.3
108,705 - +0.3
108,707 + +0.1
108,707 + -0.6
108,708 - +0.4
108,708 - +0.2
108,765 - -1.4
108,765 - -0.6
109,020 + -0.2
109,021 - +0.6
109,021 - -0.6
109,021 - -0.0
109,021 - +0.4
109,210 - +1.0
109,517 + +0.9
109,517 + +0.8
109,517 + +0.7
109,538 - -0.7
109,538 - +0.0
109,538 - +0.2
109,541 + +0.3
109,541 + +0.5
109,541 + +0.1
109,541 + -0.5
109,541 + +0.2
109,541 + -0.1
109,542 - -0.3
109,542 - +0.6
109,542 - -0.3
109,555 - +0.3
109,555 - -0.1
109,555 - -0.4
109,845 + H281DRAFT_05834 0.31 +0.1
109,845 + H281DRAFT_05834 0.31 -1.9
109,846 - H281DRAFT_05834 0.31 -0.0
109,930 + H281DRAFT_05834 0.41 -0.7
109,930 + H281DRAFT_05834 0.41 -0.1
109,931 - H281DRAFT_05834 0.42 +0.1
110,033 - H281DRAFT_05834 0.54 -0.3
110,044 + H281DRAFT_05834 0.56 -0.4
110,044 + H281DRAFT_05834 0.56 -0.9
110,051 + H281DRAFT_05834 0.56 -0.3
110,250 + H281DRAFT_05834 0.81 -0.6
110,250 + H281DRAFT_05834 0.81 +0.3
110,412 - -0.1
110,484 + +0.8
110,484 + -0.7
110,484 + -0.6
110,484 + -0.9
110,484 + +0.4
110,484 + +0.3
110,484 + +0.3
110,484 + -0.1
110,484 + +1.0
110,484 + -0.9
110,484 + -0.7
110,485 - -0.5
110,485 - +0.6
110,485 - +0.7
110,485 - +0.4
110,485 - +0.1
110,485 - -0.1
110,485 - +0.5
110,485 - -0.8
110,485 - +0.3
110,485 - -0.7
110,485 - +0.1
110,485 - -0.3
110,485 - -0.4
110,485 - +0.6
110,504 + +0.6
110,505 - -0.5
110,518 + -0.1
110,519 - -0.1
110,519 - -0.5
110,612 + +0.3
110,612 + -1.0
110,612 + -0.1
110,612 + +0.7
110,612 + -0.3
110,613 - -0.5
110,613 - -2.7
110,618 + -0.4
110,618 + +0.7
110,618 + -0.7
110,619 - +0.3
110,619 - +0.5
110,619 - -0.4
110,869 + H281DRAFT_05835 0.38 -2.2
110,870 - H281DRAFT_05835 0.38 -0.0
111,181 + H281DRAFT_05835 0.74 +0.0
111,181 + H281DRAFT_05835 0.74 -1.0
111,209 - H281DRAFT_05835 0.77 -0.3

Or see this region's nucleotide sequence