Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04823

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04822 and H281DRAFT_04823 are separated by 10 nucleotidesH281DRAFT_04823 and H281DRAFT_04824 overlap by 16 nucleotidesH281DRAFT_04824 and H281DRAFT_04825 are separated by 7 nucleotides H281DRAFT_04822: H281DRAFT_04822 - dTDP-glucose 4,6-dehydratase, at 257,215 to 258,276 _04822 H281DRAFT_04823: H281DRAFT_04823 - Glucose-1-phosphate thymidylyltransferase, at 258,287 to 259,180 _04823 H281DRAFT_04824: H281DRAFT_04824 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 259,165 to 259,716 _04824 H281DRAFT_04825: H281DRAFT_04825 - dTDP-4-dehydrorhamnose reductase, at 259,724 to 260,617 _04825 Position (kb) 258 259 260Strain fitness (log2 ratio) -1 0 1at 258.259 kb on + strandat 258.259 kb on + strandat 259.150 kb on + strandat 259.150 kb on + strandat 259.723 kb on + strandat 259.723 kb on + strandat 259.723 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
258,259 + +0.4
258,259 + +0.1
259,150 + -0.9
259,150 + +0.3
259,723 + -0.0
259,723 + -0.8
259,723 + +0.6

Or see this region's nucleotide sequence