Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04152

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04151 and H281DRAFT_04152 are separated by 371 nucleotidesH281DRAFT_04152 and H281DRAFT_04153 are separated by 115 nucleotides H281DRAFT_04151: H281DRAFT_04151 - transcriptional regulator, AraC family, at 262,045 to 263,025 _04151 H281DRAFT_04152: H281DRAFT_04152 - D-arabinitol 4-dehydrogenase, at 263,397 to 264,809 _04152 H281DRAFT_04153: H281DRAFT_04153 - xylulokinase, at 264,925 to 266,406 _04153 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2at 263.103 kb on + strandat 263.103 kb on + strandat 263.104 kb on - strandat 263.382 kb on + strandat 263.604 kb on + strand, within H281DRAFT_04152at 263.604 kb on + strand, within H281DRAFT_04152at 263.606 kb on + strand, within H281DRAFT_04152at 263.606 kb on + strand, within H281DRAFT_04152at 263.607 kb on - strand, within H281DRAFT_04152at 263.764 kb on - strand, within H281DRAFT_04152at 263.766 kb on + strand, within H281DRAFT_04152at 263.767 kb on - strand, within H281DRAFT_04152at 263.767 kb on - strand, within H281DRAFT_04152at 263.767 kb on - strand, within H281DRAFT_04152at 263.834 kb on + strand, within H281DRAFT_04152at 263.834 kb on + strand, within H281DRAFT_04152at 263.834 kb on + strand, within H281DRAFT_04152at 263.834 kb on + strand, within H281DRAFT_04152at 263.835 kb on - strand, within H281DRAFT_04152at 263.835 kb on - strand, within H281DRAFT_04152at 263.844 kb on + strand, within H281DRAFT_04152at 264.261 kb on - strand, within H281DRAFT_04152at 264.261 kb on - strand, within H281DRAFT_04152at 264.300 kb on + strand, within H281DRAFT_04152at 264.301 kb on - strand, within H281DRAFT_04152at 264.352 kb on - strand, within H281DRAFT_04152at 264.444 kb on + strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.445 kb on - strand, within H281DRAFT_04152at 264.446 kb on + strand, within H281DRAFT_04152at 264.446 kb on + strand, within H281DRAFT_04152at 264.624 kb on + strand, within H281DRAFT_04152at 264.625 kb on - strand, within H281DRAFT_04152at 264.625 kb on - strand, within H281DRAFT_04152at 264.810 kb on + strandat 264.811 kb on - strandat 264.855 kb on + strandat 264.929 kb on - strandat 265.706 kb on + strand, within H281DRAFT_04153

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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263,103 + -0.5
263,103 + +0.3
263,104 - -0.1
263,382 + +0.5
263,604 + H281DRAFT_04152 0.15 -0.1
263,604 + H281DRAFT_04152 0.15 +1.4
263,606 + H281DRAFT_04152 0.15 +0.4
263,606 + H281DRAFT_04152 0.15 +0.6
263,607 - H281DRAFT_04152 0.15 +0.3
263,764 - H281DRAFT_04152 0.26 -2.3
263,766 + H281DRAFT_04152 0.26 -0.7
263,767 - H281DRAFT_04152 0.26 -0.1
263,767 - H281DRAFT_04152 0.26 +1.9
263,767 - H281DRAFT_04152 0.26 +0.7
263,834 + H281DRAFT_04152 0.31 +0.8
263,834 + H281DRAFT_04152 0.31 -0.9
263,834 + H281DRAFT_04152 0.31 -0.3
263,834 + H281DRAFT_04152 0.31 +1.6
263,835 - H281DRAFT_04152 0.31 -0.6
263,835 - H281DRAFT_04152 0.31 -0.1
263,844 + H281DRAFT_04152 0.32 -0.1
264,261 - H281DRAFT_04152 0.61 -0.4
264,261 - H281DRAFT_04152 0.61 +1.2
264,300 + H281DRAFT_04152 0.64 -0.2
264,301 - H281DRAFT_04152 0.64 +0.3
264,352 - H281DRAFT_04152 0.68 -0.1
264,444 + H281DRAFT_04152 0.74 -1.5
264,445 - H281DRAFT_04152 0.74 +0.7
264,445 - H281DRAFT_04152 0.74 +1.3
264,445 - H281DRAFT_04152 0.74 -1.1
264,445 - H281DRAFT_04152 0.74 +0.7
264,445 - H281DRAFT_04152 0.74 +0.5
264,446 + H281DRAFT_04152 0.74 +1.1
264,446 + H281DRAFT_04152 0.74 -0.1
264,624 + H281DRAFT_04152 0.87 +0.6
264,625 - H281DRAFT_04152 0.87 +0.5
264,625 - H281DRAFT_04152 0.87 +0.1
264,810 + +0.5
264,811 - +0.2
264,855 + +0.3
264,929 - +0.7
265,706 + H281DRAFT_04153 0.53 -0.2

Or see this region's nucleotide sequence