Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04065

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04064 and H281DRAFT_04065 are separated by 2 nucleotidesH281DRAFT_04065 and H281DRAFT_04066 are separated by 66 nucleotides H281DRAFT_04064: H281DRAFT_04064 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 166,099 to 167,058 _04064 H281DRAFT_04065: H281DRAFT_04065 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA, at 167,061 to 167,627 _04065 H281DRAFT_04066: H281DRAFT_04066 - DNA replication and repair protein RadC, at 167,694 to 168,458 _04066 Position (kb) 167 168Strain fitness (log2 ratio) -2 -1 0 1 2 3at 166.086 kb on + strandat 166.087 kb on - strandat 166.308 kb on + strand, within H281DRAFT_04064at 166.309 kb on - strandat 166.310 kb on + strand, within H281DRAFT_04064at 166.310 kb on + strand, within H281DRAFT_04064at 166.310 kb on + strand, within H281DRAFT_04064at 166.311 kb on - strand, within H281DRAFT_04064at 166.311 kb on - strand, within H281DRAFT_04064at 166.311 kb on - strandat 166.445 kb on + strand, within H281DRAFT_04064at 166.445 kb on + strandat 166.445 kb on + strandat 166.485 kb on - strand, within H281DRAFT_04064at 166.485 kb on - strand, within H281DRAFT_04064at 166.614 kb on - strand, within H281DRAFT_04064at 166.905 kb on + strand, within H281DRAFT_04064at 167.063 kb on - strandat 167.618 kb on + strandat 167.618 kb on + strandat 167.618 kb on + strandat 167.618 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.691 kb on + strandat 167.692 kb on - strandat 167.692 kb on - strandat 167.692 kb on - strandat 167.692 kb on - strandat 167.692 kb on - strandat 167.692 kb on - strandat 167.692 kb on - strandat 167.693 kb on + strandat 167.693 kb on + strandat 167.693 kb on + strandat 167.693 kb on + strandat 167.694 kb on - strandat 167.694 kb on - strandat 167.694 kb on - strandat 167.704 kb on - strandat 167.704 kb on - strandat 167.704 kb on - strandat 167.704 kb on - strandat 167.851 kb on + strand, within H281DRAFT_04066at 167.852 kb on - strand, within H281DRAFT_04066at 167.852 kb on - strand, within H281DRAFT_04066at 167.852 kb on - strand, within H281DRAFT_04066at 167.881 kb on + strand, within H281DRAFT_04066at 167.976 kb on + strand, within H281DRAFT_04066at 167.976 kb on + strand, within H281DRAFT_04066at 167.977 kb on - strand, within H281DRAFT_04066at 167.977 kb on - strand, within H281DRAFT_04066at 168.230 kb on + strand, within H281DRAFT_04066at 168.241 kb on - strand, within H281DRAFT_04066at 168.302 kb on + strand, within H281DRAFT_04066at 168.302 kb on + strand, within H281DRAFT_04066at 168.303 kb on - strand, within H281DRAFT_04066at 168.410 kb on - strandat 168.428 kb on - strandat 168.428 kb on - strandat 168.428 kb on - strandat 168.429 kb on + strandat 168.429 kb on + strandat 168.429 kb on + strandat 168.483 kb on + strandat 168.483 kb on + strandat 168.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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166,086 + +0.3
166,087 - -0.1
166,308 + H281DRAFT_04064 0.22 -0.0
166,309 - +0.3
166,310 + H281DRAFT_04064 0.22 -1.8
166,310 + H281DRAFT_04064 0.22 -1.8
166,310 + H281DRAFT_04064 0.22 -1.5
166,311 - H281DRAFT_04064 0.22 -2.5
166,311 - H281DRAFT_04064 0.22 -0.9
166,311 - +1.9
166,445 + H281DRAFT_04064 0.36 -0.9
166,445 + +0.9
166,445 + +0.9
166,485 - H281DRAFT_04064 0.40 +1.1
166,485 - H281DRAFT_04064 0.40 +0.9
166,614 - H281DRAFT_04064 0.54 -1.6
166,905 + H281DRAFT_04064 0.84 +2.9
167,063 - +0.5
167,618 + -2.2
167,618 + -0.7
167,618 + +0.5
167,618 + -0.0
167,691 + +0.4
167,691 + -0.7
167,691 + -0.4
167,691 + -0.7
167,691 + +0.4
167,691 + +0.3
167,691 + +0.4
167,691 + -1.9
167,691 + +0.2
167,691 + -0.7
167,692 - +0.4
167,692 - +0.5
167,692 - -0.2
167,692 - -0.4
167,692 - -0.2
167,692 - -0.4
167,692 - -0.0
167,693 + +0.3
167,693 + +0.1
167,693 + -0.1
167,693 + -0.5
167,694 - +0.5
167,694 - -0.1
167,694 - -0.3
167,704 - -1.2
167,704 - +0.1
167,704 - +2.0
167,704 - -0.3
167,851 + H281DRAFT_04066 0.21 +0.3
167,852 - H281DRAFT_04066 0.21 -0.6
167,852 - H281DRAFT_04066 0.21 -0.2
167,852 - H281DRAFT_04066 0.21 +0.4
167,881 + H281DRAFT_04066 0.24 +0.7
167,976 + H281DRAFT_04066 0.37 +0.9
167,976 + H281DRAFT_04066 0.37 +0.1
167,977 - H281DRAFT_04066 0.37 +0.8
167,977 - H281DRAFT_04066 0.37 +0.0
168,230 + H281DRAFT_04066 0.70 +0.6
168,241 - H281DRAFT_04066 0.72 +0.7
168,302 + H281DRAFT_04066 0.79 -0.2
168,302 + H281DRAFT_04066 0.79 +0.2
168,303 - H281DRAFT_04066 0.80 -0.2
168,410 - -0.1
168,428 - -0.4
168,428 - -0.1
168,428 - +1.1
168,429 + -0.7
168,429 + -0.6
168,429 + -0.4
168,483 + +0.2
168,483 + +0.3
168,483 + -0.6

Or see this region's nucleotide sequence