Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04063

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04062 and H281DRAFT_04063 are separated by 229 nucleotidesH281DRAFT_04063 and H281DRAFT_04064 are separated by 535 nucleotides H281DRAFT_04062: H281DRAFT_04062 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 163,181 to 164,131 _04062 H281DRAFT_04063: H281DRAFT_04063 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 164,361 to 165,563 _04063 H281DRAFT_04064: H281DRAFT_04064 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 166,099 to 167,058 _04064 Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 163.434 kb on + strand, within H281DRAFT_04062at 163.435 kb on - strand, within H281DRAFT_04062at 163.875 kb on + strand, within H281DRAFT_04062at 163.970 kb on + strand, within H281DRAFT_04062at 163.971 kb on - strand, within H281DRAFT_04062at 164.046 kb on + strandat 164.056 kb on + strandat 164.056 kb on + strandat 164.056 kb on + strandat 164.057 kb on - strandat 164.057 kb on - strandat 164.057 kb on - strandat 164.057 kb on - strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.080 kb on - strandat 164.106 kb on - strandat 164.125 kb on + strandat 164.125 kb on + strandat 164.126 kb on - strandat 164.133 kb on + strandat 164.134 kb on - strandat 164.134 kb on - strandat 164.143 kb on + strandat 164.229 kb on + strandat 164.229 kb on + strandat 164.363 kb on - strandat 164.363 kb on - strandat 164.410 kb on + strandat 164.411 kb on - strandat 164.411 kb on - strandat 164.411 kb on - strandat 164.411 kb on - strandat 164.417 kb on + strandat 164.480 kb on - strandat 164.480 kb on - strandat 164.557 kb on + strand, within H281DRAFT_04063at 164.557 kb on + strand, within H281DRAFT_04063at 164.558 kb on - strand, within H281DRAFT_04063at 164.569 kb on + strand, within H281DRAFT_04063at 164.569 kb on + strand, within H281DRAFT_04063at 164.570 kb on - strand, within H281DRAFT_04063at 164.570 kb on - strand, within H281DRAFT_04063at 164.570 kb on - strand, within H281DRAFT_04063at 164.584 kb on + strand, within H281DRAFT_04063at 164.584 kb on + strand, within H281DRAFT_04063at 164.585 kb on - strand, within H281DRAFT_04063at 164.585 kb on - strand, within H281DRAFT_04063at 164.617 kb on + strand, within H281DRAFT_04063at 164.617 kb on + strand, within H281DRAFT_04063at 164.617 kb on + strand, within H281DRAFT_04063at 164.618 kb on - strand, within H281DRAFT_04063at 164.618 kb on - strand, within H281DRAFT_04063at 164.727 kb on - strand, within H281DRAFT_04063at 165.071 kb on - strand, within H281DRAFT_04063at 165.148 kb on + strand, within H281DRAFT_04063at 165.149 kb on - strand, within H281DRAFT_04063at 165.149 kb on - strandat 165.149 kb on - strand, within H281DRAFT_04063at 165.568 kb on + strandat 165.569 kb on - strandat 165.569 kb on - strandat 165.569 kb on - strandat 165.569 kb on - strandat 165.593 kb on + strandat 165.633 kb on + strandat 165.634 kb on - strandat 165.634 kb on - strandat 165.657 kb on + strandat 165.658 kb on - strandat 165.658 kb on - strandat 165.835 kb on - strandat 165.845 kb on + strandat 165.845 kb on + strandat 165.845 kb on + strandat 165.877 kb on + strandat 165.878 kb on - strandat 165.878 kb on - strandat 165.890 kb on + strandat 165.890 kb on + strandat 165.891 kb on - strandat 165.916 kb on - strandat 165.945 kb on + strandat 166.086 kb on + strandat 166.087 kb on - strandat 166.308 kb on + strand, within H281DRAFT_04064at 166.309 kb on - strandat 166.310 kb on + strand, within H281DRAFT_04064at 166.310 kb on + strand, within H281DRAFT_04064at 166.310 kb on + strand, within H281DRAFT_04064at 166.311 kb on - strand, within H281DRAFT_04064at 166.311 kb on - strand, within H281DRAFT_04064at 166.311 kb on - strandat 166.445 kb on + strand, within H281DRAFT_04064at 166.445 kb on + strandat 166.445 kb on + strandat 166.485 kb on - strand, within H281DRAFT_04064at 166.485 kb on - strand, within H281DRAFT_04064

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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163,434 + H281DRAFT_04062 0.27 +0.5
163,435 - H281DRAFT_04062 0.27 +0.6
163,875 + H281DRAFT_04062 0.73 +0.3
163,970 + H281DRAFT_04062 0.83 -0.3
163,971 - H281DRAFT_04062 0.83 -0.2
164,046 + +0.2
164,056 + -0.5
164,056 + -0.1
164,056 + -0.1
164,057 - +0.8
164,057 - -0.8
164,057 - +0.7
164,057 - +0.4
164,079 + +0.3
164,079 + +0.1
164,079 + +0.1
164,080 - -0.2
164,106 - +0.0
164,125 + +0.2
164,125 + +0.5
164,126 - -0.2
164,133 + +0.8
164,134 - +0.9
164,134 - -0.4
164,143 + -0.9
164,229 + -0.5
164,229 + +0.4
164,363 - -0.0
164,363 - +0.8
164,410 + -0.0
164,411 - +0.1
164,411 - +2.3
164,411 - -0.4
164,411 - +0.3
164,417 + -0.2
164,480 - -0.1
164,480 - +0.8
164,557 + H281DRAFT_04063 0.16 +0.4
164,557 + H281DRAFT_04063 0.16 +0.2
164,558 - H281DRAFT_04063 0.16 -0.0
164,569 + H281DRAFT_04063 0.17 +0.3
164,569 + H281DRAFT_04063 0.17 -0.5
164,570 - H281DRAFT_04063 0.17 +1.2
164,570 - H281DRAFT_04063 0.17 -0.4
164,570 - H281DRAFT_04063 0.17 +0.4
164,584 + H281DRAFT_04063 0.19 +0.4
164,584 + H281DRAFT_04063 0.19 +0.3
164,585 - H281DRAFT_04063 0.19 +0.0
164,585 - H281DRAFT_04063 0.19 +0.1
164,617 + H281DRAFT_04063 0.21 -0.1
164,617 + H281DRAFT_04063 0.21 -0.4
164,617 + H281DRAFT_04063 0.21 -0.6
164,618 - H281DRAFT_04063 0.21 +0.5
164,618 - H281DRAFT_04063 0.21 +0.0
164,727 - H281DRAFT_04063 0.30 -0.3
165,071 - H281DRAFT_04063 0.59 -0.6
165,148 + H281DRAFT_04063 0.65 +0.2
165,149 - H281DRAFT_04063 0.66 +0.1
165,149 - -0.9
165,149 - H281DRAFT_04063 0.66 -0.3
165,568 + -0.0
165,569 - +0.2
165,569 - -0.1
165,569 - +0.5
165,569 - +0.2
165,593 + +0.7
165,633 + +1.2
165,634 - +0.5
165,634 - -0.6
165,657 + +0.0
165,658 - -0.1
165,658 - +0.2
165,835 - +0.5
165,845 + +0.5
165,845 + -0.3
165,845 + -0.7
165,877 + -0.1
165,878 - -0.5
165,878 - +0.3
165,890 + -0.6
165,890 + -0.0
165,891 - +0.4
165,916 - +1.0
165,945 + -1.1
166,086 + +0.3
166,087 - -0.1
166,308 + H281DRAFT_04064 0.22 -0.0
166,309 - +0.3
166,310 + H281DRAFT_04064 0.22 -1.8
166,310 + H281DRAFT_04064 0.22 -1.8
166,310 + H281DRAFT_04064 0.22 -1.5
166,311 - H281DRAFT_04064 0.22 -2.5
166,311 - H281DRAFT_04064 0.22 -0.9
166,311 - +1.9
166,445 + H281DRAFT_04064 0.36 -0.9
166,445 + +0.9
166,445 + +0.9
166,485 - H281DRAFT_04064 0.40 +1.1
166,485 - H281DRAFT_04064 0.40 +0.9

Or see this region's nucleotide sequence