Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03763

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03762 and H281DRAFT_03763 are separated by 92 nucleotidesH281DRAFT_03763 and H281DRAFT_03764 overlap by 4 nucleotides H281DRAFT_03762: H281DRAFT_03762 - TRAP transporter, DctM subunit, at 279,261 to 281,147 _03762 H281DRAFT_03763: H281DRAFT_03763 - Catechol 2,3-dioxygenase, at 281,240 to 281,779 _03763 H281DRAFT_03764: H281DRAFT_03764 - ribulose-bisphosphate carboxylase large chain, at 281,776 to 283,074 _03764 Position (kb) 281 282Strain fitness (log2 ratio) -2 -1 0 1at 280.647 kb on + strand, within H281DRAFT_03762at 280.757 kb on + strand, within H281DRAFT_03762at 280.868 kb on - strand, within H281DRAFT_03762at 281.076 kb on + strandat 281.217 kb on - strandat 281.372 kb on + strand, within H281DRAFT_03763at 281.372 kb on + strand, within H281DRAFT_03763at 281.393 kb on + strand, within H281DRAFT_03763at 281.394 kb on - strand, within H281DRAFT_03763at 281.480 kb on + strand, within H281DRAFT_03763at 281.628 kb on - strand, within H281DRAFT_03763at 281.628 kb on - strand, within H281DRAFT_03763at 281.775 kb on + strandat 282.729 kb on - strand, within H281DRAFT_03764

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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280,647 + H281DRAFT_03762 0.73 -2.0
280,757 + H281DRAFT_03762 0.79 +0.4
280,868 - H281DRAFT_03762 0.85 +1.5
281,076 + -0.6
281,217 - +0.1
281,372 + H281DRAFT_03763 0.24 -0.5
281,372 + H281DRAFT_03763 0.24 +1.3
281,393 + H281DRAFT_03763 0.28 +0.8
281,394 - H281DRAFT_03763 0.29 +1.0
281,480 + H281DRAFT_03763 0.44 +0.1
281,628 - H281DRAFT_03763 0.72 +0.6
281,628 - H281DRAFT_03763 0.72 +0.1
281,775 + +0.4
282,729 - H281DRAFT_03764 0.73 -0.5

Or see this region's nucleotide sequence