Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03432

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03431 and H281DRAFT_03432 are separated by 124 nucleotidesH281DRAFT_03432 and H281DRAFT_03433 are separated by 176 nucleotides H281DRAFT_03431: H281DRAFT_03431 - hypothetical protein, at 507,748 to 509,070 _03431 H281DRAFT_03432: H281DRAFT_03432 - TupA-like ATPgrasp, at 509,195 to 510,145 _03432 H281DRAFT_03433: H281DRAFT_03433 - Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain, at 510,322 to 511,203 _03433 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1at 508.348 kb on + strand, within H281DRAFT_03431at 508.348 kb on + strand, within H281DRAFT_03431at 508.390 kb on + strand, within H281DRAFT_03431at 508.456 kb on + strand, within H281DRAFT_03431at 508.723 kb on - strand, within H281DRAFT_03431at 508.739 kb on - strand, within H281DRAFT_03431at 508.836 kb on + strand, within H281DRAFT_03431at 508.960 kb on + strandat 509.520 kb on + strand, within H281DRAFT_03432at 509.838 kb on - strand, within H281DRAFT_03432at 509.838 kb on - strand, within H281DRAFT_03432at 510.128 kb on + strandat 510.236 kb on + strandat 510.572 kb on + strand, within H281DRAFT_03433at 510.632 kb on + strand, within H281DRAFT_03433at 510.725 kb on + strand, within H281DRAFT_03433at 511.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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508,348 + H281DRAFT_03431 0.45 -0.1
508,348 + H281DRAFT_03431 0.45 -0.6
508,390 + H281DRAFT_03431 0.49 +0.2
508,456 + H281DRAFT_03431 0.54 +0.1
508,723 - H281DRAFT_03431 0.74 -0.5
508,739 - H281DRAFT_03431 0.75 -0.2
508,836 + H281DRAFT_03431 0.82 -0.8
508,960 + +0.3
509,520 + H281DRAFT_03432 0.34 +0.9
509,838 - H281DRAFT_03432 0.68 +0.4
509,838 - H281DRAFT_03432 0.68 +0.4
510,128 + +0.6
510,236 + +0.9
510,572 + H281DRAFT_03433 0.28 +0.2
510,632 + H281DRAFT_03433 0.35 -0.3
510,725 + H281DRAFT_03433 0.46 -0.2
511,125 - -2.1

Or see this region's nucleotide sequence