Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03320

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03319 and H281DRAFT_03320 are separated by 180 nucleotidesH281DRAFT_03320 and H281DRAFT_03321 are separated by 57 nucleotidesH281DRAFT_03321 and H281DRAFT_03322 are separated by 164 nucleotidesH281DRAFT_03322 and H281DRAFT_03323 are separated by 54 nucleotides H281DRAFT_03319: H281DRAFT_03319 - Predicted outer membrane protein, at 381,514 to 382,056 _03319 H281DRAFT_03320: H281DRAFT_03320 - Uncharacterized conserved protein, at 382,237 to 382,665 _03320 H281DRAFT_03321: H281DRAFT_03321 - hypothetical protein, at 382,723 to 382,848 _03321 H281DRAFT_03322: H281DRAFT_03322 - hypothetical protein, at 383,013 to 383,306 _03322 H281DRAFT_03323: H281DRAFT_03323 - hypothetical protein, at 383,361 to 383,996 _03323 Position (kb) 382 383Strain fitness (log2 ratio) -1 0 1 2at 381.406 kb on - strandat 381.880 kb on + strand, within H281DRAFT_03319at 381.881 kb on - strand, within H281DRAFT_03319at 381.882 kb on + strand, within H281DRAFT_03319at 382.009 kb on + strandat 382.057 kb on + strandat 382.058 kb on - strandat 382.223 kb on - strandat 382.517 kb on - strand, within H281DRAFT_03320at 382.592 kb on + strand, within H281DRAFT_03320at 382.698 kb on + strandat 382.698 kb on + strandat 383.124 kb on - strand, within H281DRAFT_03322at 383.213 kb on - strand, within H281DRAFT_03322

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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381,406 - -0.1
381,880 + H281DRAFT_03319 0.67 +1.3
381,881 - H281DRAFT_03319 0.68 +0.0
381,882 + H281DRAFT_03319 0.68 -1.0
382,009 + +0.0
382,057 + +0.1
382,058 - +0.3
382,223 - -0.6
382,517 - H281DRAFT_03320 0.65 +0.9
382,592 + H281DRAFT_03320 0.83 +0.3
382,698 + -0.5
382,698 + +2.3
383,124 - H281DRAFT_03322 0.38 -0.1
383,213 - H281DRAFT_03322 0.68 +0.1

Or see this region's nucleotide sequence