Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03278

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03276 and H281DRAFT_03277 are separated by 140 nucleotidesH281DRAFT_03277 and H281DRAFT_03278 are separated by 205 nucleotidesH281DRAFT_03278 and H281DRAFT_03279 are separated by 124 nucleotides H281DRAFT_03276: H281DRAFT_03276 - hypothetical protein, at 332,845 to 333,456 _03276 H281DRAFT_03277: H281DRAFT_03277 - hypothetical protein, at 333,597 to 333,854 _03277 H281DRAFT_03278: H281DRAFT_03278 - Threonine dehydrogenase, at 334,060 to 335,268 _03278 H281DRAFT_03279: H281DRAFT_03279 - ATP-dependent DNA helicase RecQ, at 335,393 to 337,114 _03279 Position (kb) 334 335 336Strain fitness (log2 ratio) -1 0 1at 333.065 kb on + strand, within H281DRAFT_03276at 333.277 kb on + strand, within H281DRAFT_03276at 333.277 kb on + strand, within H281DRAFT_03276at 333.455 kb on - strandat 333.472 kb on + strandat 333.686 kb on - strand, within H281DRAFT_03277at 334.019 kb on + strandat 334.074 kb on - strandat 334.189 kb on - strand, within H281DRAFT_03278at 335.467 kb on - strandat 335.467 kb on - strandat 335.790 kb on + strand, within H281DRAFT_03279at 335.791 kb on - strand, within H281DRAFT_03279at 335.791 kb on - strand, within H281DRAFT_03279at 335.990 kb on + strand, within H281DRAFT_03279

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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333,065 + H281DRAFT_03276 0.36 -0.5
333,277 + H281DRAFT_03276 0.71 -0.1
333,277 + H281DRAFT_03276 0.71 +0.6
333,455 - +0.5
333,472 + -0.3
333,686 - H281DRAFT_03277 0.34 +0.1
334,019 + -0.1
334,074 - +0.4
334,189 - H281DRAFT_03278 0.11 +0.6
335,467 - +0.1
335,467 - +0.4
335,790 + H281DRAFT_03279 0.23 +0.3
335,791 - H281DRAFT_03279 0.23 -0.0
335,791 - H281DRAFT_03279 0.23 +0.2
335,990 + H281DRAFT_03279 0.35 +0.0

Or see this region's nucleotide sequence