Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02717

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02716 and H281DRAFT_02717 are separated by 138 nucleotidesH281DRAFT_02717 and H281DRAFT_02718 are separated by 119 nucleotides H281DRAFT_02716: H281DRAFT_02716 - putative transposase, at 300,321 to 301,037 _02716 H281DRAFT_02717: H281DRAFT_02717 - hypothetical protein, at 301,176 to 301,478 _02717 H281DRAFT_02718: H281DRAFT_02718 - Glycine/D-amino acid oxidase (deaminating), at 301,598 to 302,998 _02718 Position (kb) 301 302Strain fitness (log2 ratio) -2 -1 0 1at 300.199 kb on - strandat 300.343 kb on - strandat 300.414 kb on + strand, within H281DRAFT_02716at 300.420 kb on + strand, within H281DRAFT_02716at 300.421 kb on - strand, within H281DRAFT_02716at 300.522 kb on + strand, within H281DRAFT_02716at 300.522 kb on + strand, within H281DRAFT_02716at 300.523 kb on - strand, within H281DRAFT_02716at 300.655 kb on - strand, within H281DRAFT_02716at 300.710 kb on - strand, within H281DRAFT_02716at 300.771 kb on - strand, within H281DRAFT_02716at 300.795 kb on + strand, within H281DRAFT_02716at 301.082 kb on + strandat 301.083 kb on - strandat 301.259 kb on + strand, within H281DRAFT_02717at 301.259 kb on + strand, within H281DRAFT_02717at 301.271 kb on - strand, within H281DRAFT_02717at 301.310 kb on - strand, within H281DRAFT_02717at 301.348 kb on + strand, within H281DRAFT_02717at 301.348 kb on + strand, within H281DRAFT_02717at 301.361 kb on + strand, within H281DRAFT_02717at 301.563 kb on + strandat 301.706 kb on + strandat 301.724 kb on + strandat 301.928 kb on + strand, within H281DRAFT_02718at 302.130 kb on + strand, within H281DRAFT_02718at 302.252 kb on - strand, within H281DRAFT_02718

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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300,199 - +0.1
300,343 - -0.6
300,414 + H281DRAFT_02716 0.13 +0.3
300,420 + H281DRAFT_02716 0.14 +0.1
300,421 - H281DRAFT_02716 0.14 -0.3
300,522 + H281DRAFT_02716 0.28 -2.1
300,522 + H281DRAFT_02716 0.28 -0.2
300,523 - H281DRAFT_02716 0.28 +0.2
300,655 - H281DRAFT_02716 0.47 +0.2
300,710 - H281DRAFT_02716 0.54 +0.2
300,771 - H281DRAFT_02716 0.63 +0.1
300,795 + H281DRAFT_02716 0.66 -0.2
301,082 + -2.7
301,083 - -0.7
301,259 + H281DRAFT_02717 0.27 +0.8
301,259 + H281DRAFT_02717 0.27 +1.4
301,271 - H281DRAFT_02717 0.31 +0.7
301,310 - H281DRAFT_02717 0.44 -0.3
301,348 + H281DRAFT_02717 0.57 +0.0
301,348 + H281DRAFT_02717 0.57 -0.2
301,361 + H281DRAFT_02717 0.61 +0.7
301,563 + -0.4
301,706 + -0.2
301,724 + +0.0
301,928 + H281DRAFT_02718 0.24 +0.7
302,130 + H281DRAFT_02718 0.38 +1.1
302,252 - H281DRAFT_02718 0.47 -0.1

Or see this region's nucleotide sequence