Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02698

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02696 and H281DRAFT_02697 are separated by 212 nucleotidesH281DRAFT_02697 and H281DRAFT_02698 are separated by 82 nucleotidesH281DRAFT_02698 and H281DRAFT_02699 are separated by 462 nucleotides H281DRAFT_02696: H281DRAFT_02696 - glutathione S-transferase, at 276,870 to 277,505 _02696 H281DRAFT_02697: H281DRAFT_02697 - Uncharacterized conserved protein, at 277,718 to 278,089 _02697 H281DRAFT_02698: H281DRAFT_02698 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 278,172 to 278,861 _02698 H281DRAFT_02699: H281DRAFT_02699 - filamentous hemagglutinin family N-terminal domain-containing protein, at 279,324 to 281,738 _02699 Position (kb) 278 279Strain fitness (log2 ratio) -1 0 1at 277.187 kb on + strand, within H281DRAFT_02696at 277.322 kb on + strand, within H281DRAFT_02696at 277.323 kb on - strand, within H281DRAFT_02696at 277.523 kb on - strandat 277.567 kb on + strandat 277.568 kb on - strandat 277.688 kb on + strandat 277.688 kb on + strandat 277.694 kb on + strandat 277.740 kb on - strandat 278.182 kb on - strandat 278.183 kb on + strandat 278.183 kb on + strandat 278.274 kb on - strand, within H281DRAFT_02698at 278.473 kb on - strand, within H281DRAFT_02698at 278.682 kb on + strand, within H281DRAFT_02698at 279.100 kb on + strandat 279.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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277,187 + H281DRAFT_02696 0.50 -0.6
277,322 + H281DRAFT_02696 0.71 +1.1
277,323 - H281DRAFT_02696 0.71 +1.0
277,523 - -1.3
277,567 + -0.9
277,568 - +0.8
277,688 + -0.2
277,688 + +0.1
277,694 + -0.2
277,740 - +0.4
278,182 - +0.1
278,183 + +0.1
278,183 + +0.5
278,274 - H281DRAFT_02698 0.15 +0.5
278,473 - H281DRAFT_02698 0.44 +0.4
278,682 + H281DRAFT_02698 0.74 +1.1
279,100 + +0.7
279,135 - -0.1

Or see this region's nucleotide sequence