Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02605

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02604 and H281DRAFT_02605 are separated by 585 nucleotidesH281DRAFT_02605 and H281DRAFT_02606 are separated by 317 nucleotides H281DRAFT_02604: H281DRAFT_02604 - hypothetical protein, at 180,484 to 180,786 _02604 H281DRAFT_02605: H281DRAFT_02605 - Glycosyltransferase involved in cell wall bisynthesis, at 181,372 to 182,343 _02605 H281DRAFT_02606: H281DRAFT_02606 - 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase, at 182,661 to 183,326 _02606 Position (kb) 181 182 183Strain fitness (log2 ratio) -1 0 1at 180.383 kb on - strandat 180.422 kb on - strandat 180.422 kb on - strandat 180.585 kb on - strand, within H281DRAFT_02604at 180.956 kb on + strandat 180.956 kb on + strandat 180.957 kb on - strandat 180.966 kb on + strandat 181.052 kb on + strandat 181.104 kb on + strandat 181.794 kb on - strand, within H281DRAFT_02605at 181.796 kb on - strand, within H281DRAFT_02605at 181.944 kb on - strand, within H281DRAFT_02605at 182.052 kb on + strand, within H281DRAFT_02605at 182.084 kb on + strand, within H281DRAFT_02605at 183.175 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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180,383 - +0.3
180,422 - +0.2
180,422 - -0.3
180,585 - H281DRAFT_02604 0.33 +1.5
180,956 + +1.2
180,956 + -0.3
180,957 - -0.1
180,966 + -0.3
181,052 + +0.6
181,104 + -0.1
181,794 - H281DRAFT_02605 0.43 -0.4
181,796 - H281DRAFT_02605 0.44 -0.3
181,944 - H281DRAFT_02605 0.59 -0.5
182,052 + H281DRAFT_02605 0.70 +0.3
182,084 + H281DRAFT_02605 0.73 -0.2
183,175 + +0.3

Or see this region's nucleotide sequence