Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01474

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01473 and H281DRAFT_01474 are separated by 185 nucleotidesH281DRAFT_01474 and H281DRAFT_01475 are separated by 2 nucleotides H281DRAFT_01473: H281DRAFT_01473 - transcriptional regulator, AraC family, at 340,439 to 341,383 _01473 H281DRAFT_01474: H281DRAFT_01474 - isoquinoline 1-oxidoreductase, alpha subunit, at 341,569 to 342,030 _01474 H281DRAFT_01475: H281DRAFT_01475 - isoquinoline 1-oxidoreductase, beta subunit, at 342,033 to 344,255 _01475 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 340.845 kb on + strand, within H281DRAFT_01473at 341.057 kb on + strand, within H281DRAFT_01473at 341.058 kb on - strand, within H281DRAFT_01473at 341.058 kb on - strand, within H281DRAFT_01473at 341.062 kb on - strand, within H281DRAFT_01473at 341.149 kb on - strand, within H281DRAFT_01473at 341.149 kb on - strand, within H281DRAFT_01473at 341.415 kb on + strandat 341.491 kb on - strandat 341.977 kb on + strand, within H281DRAFT_01474at 341.977 kb on + strand, within H281DRAFT_01474at 342.340 kb on + strand, within H281DRAFT_01475at 342.341 kb on - strand, within H281DRAFT_01475at 342.579 kb on + strand, within H281DRAFT_01475at 342.580 kb on - strand, within H281DRAFT_01475

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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340,845 + H281DRAFT_01473 0.43 -0.8
341,057 + H281DRAFT_01473 0.65 +1.7
341,058 - H281DRAFT_01473 0.66 +0.5
341,058 - H281DRAFT_01473 0.66 -0.3
341,062 - H281DRAFT_01473 0.66 +0.3
341,149 - H281DRAFT_01473 0.75 -2.2
341,149 - H281DRAFT_01473 0.75 -0.5
341,415 + +0.6
341,491 - +0.3
341,977 + H281DRAFT_01474 0.88 -0.3
341,977 + H281DRAFT_01474 0.88 +2.2
342,340 + H281DRAFT_01475 0.14 +1.9
342,341 - H281DRAFT_01475 0.14 -0.7
342,579 + H281DRAFT_01475 0.25 -0.1
342,580 - H281DRAFT_01475 0.25 +0.7

Or see this region's nucleotide sequence