Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01273

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01272 and H281DRAFT_01273 are separated by 147 nucleotidesH281DRAFT_01273 and H281DRAFT_01274 are separated by 10 nucleotides H281DRAFT_01272: H281DRAFT_01272 - hypothetical protein, at 106,483 to 107,670 _01272 H281DRAFT_01273: H281DRAFT_01273 - feruloyl esterase, at 107,818 to 109,524 _01273 H281DRAFT_01274: H281DRAFT_01274 - Outer membrane protein (porin), at 109,535 to 110,677 _01274 Position (kb) 107 108 109 110Strain fitness (log2 ratio) -1 0 1at 106.931 kb on - strand, within H281DRAFT_01272at 107.134 kb on + strand, within H281DRAFT_01272at 107.293 kb on + strand, within H281DRAFT_01272at 107.520 kb on - strand, within H281DRAFT_01272at 107.648 kb on - strandat 107.813 kb on - strandat 108.189 kb on - strand, within H281DRAFT_01273at 109.005 kb on - strand, within H281DRAFT_01273at 109.239 kb on - strand, within H281DRAFT_01273at 109.665 kb on + strand, within H281DRAFT_01274at 109.692 kb on + strand, within H281DRAFT_01274at 109.792 kb on - strand, within H281DRAFT_01274at 109.905 kb on + strand, within H281DRAFT_01274at 110.203 kb on - strand, within H281DRAFT_01274at 110.239 kb on - strand, within H281DRAFT_01274at 110.304 kb on + strand, within H281DRAFT_01274

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
106,931 - H281DRAFT_01272 0.38 +0.1
107,134 + H281DRAFT_01272 0.55 -0.5
107,293 + H281DRAFT_01272 0.68 +0.4
107,520 - H281DRAFT_01272 0.87 -0.4
107,648 - -1.0
107,813 - -0.8
108,189 - H281DRAFT_01273 0.22 +1.0
109,005 - H281DRAFT_01273 0.70 +0.1
109,239 - H281DRAFT_01273 0.83 +1.0
109,665 + H281DRAFT_01274 0.11 -0.7
109,692 + H281DRAFT_01274 0.14 +0.0
109,792 - H281DRAFT_01274 0.22 -0.3
109,905 + H281DRAFT_01274 0.32 -0.1
110,203 - H281DRAFT_01274 0.58 -0.6
110,239 - H281DRAFT_01274 0.62 -0.7
110,304 + H281DRAFT_01274 0.67 -0.2

Or see this region's nucleotide sequence