Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01194

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01193 and H281DRAFT_01194 are separated by 286 nucleotidesH281DRAFT_01194 and H281DRAFT_01195 are separated by 310 nucleotides H281DRAFT_01193: H281DRAFT_01193 - 4-hydroxyproline epimerase, at 29,397 to 30,368 _01193 H281DRAFT_01194: H281DRAFT_01194 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 30,655 to 31,806 _01194 H281DRAFT_01195: H281DRAFT_01195 - 4-hydroxy-tetrahydrodipicolinate synthase, at 32,117 to 33,061 _01195 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 30.042 kb on + strand, within H281DRAFT_01193at 30.043 kb on - strand, within H281DRAFT_01193at 30.161 kb on + strand, within H281DRAFT_01193at 30.380 kb on + strandat 30.707 kb on + strandat 30.707 kb on + strandat 30.708 kb on - strandat 30.708 kb on - strandat 30.765 kb on + strandat 30.875 kb on + strand, within H281DRAFT_01194at 30.917 kb on + strand, within H281DRAFT_01194at 31.119 kb on - strandat 31.119 kb on - strand, within H281DRAFT_01194at 31.194 kb on - strand, within H281DRAFT_01194at 31.194 kb on - strand, within H281DRAFT_01194at 31.398 kb on - strand, within H281DRAFT_01194at 31.445 kb on + strand, within H281DRAFT_01194at 31.915 kb on + strandat 31.917 kb on + strandat 31.917 kb on + strandat 31.917 kb on + strandat 31.917 kb on + strandat 31.918 kb on - strandat 31.918 kb on - strandat 31.978 kb on + strandat 32.149 kb on - strandat 32.170 kb on - strandat 32.170 kb on - strandat 32.271 kb on + strand, within H281DRAFT_01195at 32.271 kb on + strand, within H281DRAFT_01195at 32.434 kb on + strand, within H281DRAFT_01195at 32.437 kb on + strand, within H281DRAFT_01195at 32.438 kb on - strand, within H281DRAFT_01195at 32.541 kb on + strand, within H281DRAFT_01195at 32.541 kb on + strand, within H281DRAFT_01195at 32.643 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.655 kb on + strand, within H281DRAFT_01195at 32.656 kb on - strand, within H281DRAFT_01195at 32.656 kb on - strand, within H281DRAFT_01195

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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30,042 + H281DRAFT_01193 0.66 -0.0
30,043 - H281DRAFT_01193 0.66 +1.0
30,161 + H281DRAFT_01193 0.79 -0.8
30,380 + +0.1
30,707 + +0.1
30,707 + -0.7
30,708 - -0.8
30,708 - -0.0
30,765 + -0.1
30,875 + H281DRAFT_01194 0.19 +0.5
30,917 + H281DRAFT_01194 0.23 -0.4
31,119 - +1.0
31,119 - H281DRAFT_01194 0.40 +0.9
31,194 - H281DRAFT_01194 0.47 -0.5
31,194 - H281DRAFT_01194 0.47 +0.5
31,398 - H281DRAFT_01194 0.64 +0.0
31,445 + H281DRAFT_01194 0.69 +0.8
31,915 + +1.0
31,917 + -0.0
31,917 + -1.0
31,917 + -1.6
31,917 + +0.5
31,918 - -0.2
31,918 - +0.3
31,978 + +0.6
32,149 - -0.2
32,170 - -0.1
32,170 - -0.1
32,271 + H281DRAFT_01195 0.16 +0.4
32,271 + H281DRAFT_01195 0.16 +1.4
32,434 + H281DRAFT_01195 0.34 +0.4
32,437 + H281DRAFT_01195 0.34 -0.4
32,438 - H281DRAFT_01195 0.34 -1.6
32,541 + H281DRAFT_01195 0.45 +0.1
32,541 + H281DRAFT_01195 0.45 -0.1
32,643 + H281DRAFT_01195 0.56 -0.2
32,655 + H281DRAFT_01195 0.57 -0.7
32,655 + H281DRAFT_01195 0.57 +0.1
32,655 + H281DRAFT_01195 0.57 +0.5
32,655 + H281DRAFT_01195 0.57 -0.5
32,656 - H281DRAFT_01195 0.57 +1.5
32,656 - H281DRAFT_01195 0.57 -1.5

Or see this region's nucleotide sequence